Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq9206 95.1 1e-14 >seq9206 Length=19012 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 |||||| |||| || | |||||| |||||||| || ||||||||||| || || Sbjct 12668 CCAGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 12727 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | ||||| |||||| | | ||||||||||| ||| | || || ||||| || Sbjct 12728 TTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCGGTGAGC 12787 Query 118719 GTTTTTACAAAAATCTGCAT 118738 ||||| || ||||| ||||| Sbjct 12788 GTTTTGACGAAAATTTGCAT 12807 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 |||||| |||| || | |||||| |||||||| || ||||||||||| || || Sbjct 11351 CCAGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 11410 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | ||||| |||||| | | ||||||||||| ||| | || || || || || Sbjct 11411 TTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGTGAGG 11470 Query 118719 GTTTTTACAAAAATCTGCATGGCT 118742 || || || || ||||||||| || Sbjct 11471 GTCTTCACGAAGATCTGCATGCCT 11494 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 118593 TGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATT 118652 || || || ||| ||||||| | ||||||||| || || || ||||||||||| || Sbjct 10938 TGCTTACCGGCGAAGATGAGTCTCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGGATC 10997 Query 118653 TTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCG 118712 || || || | ||||| |||||| | | ||||||||||| ||| | || || || Sbjct 10998 TTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 11057 Query 118713 GTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || || || || ||||||||| || Sbjct 11058 GTGAGGGTCTTCACGAAGATCTGCATGCCT 11087 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 118593 TGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATT 118652 || || || ||| ||||||| | |||||| || || || || ||||||||||| || Sbjct 11648 TGCTTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATC 11707 Query 118653 TTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCG 118712 || ||| || | ||||| |||||| | | ||||||||||| ||| | || || || Sbjct 11708 TTGGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 11767 Query 118713 GTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || || || || ||||||||| || Sbjct 11768 GTGAGGGTCTTCACGAAGATCTGCATGCCT 11797 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 118593 TGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATT 118652 || || || ||| ||||||| | ||||||||| || || || ||||||||||| || Sbjct 12255 TGCTTACCGGCGAAGATGAGTCTCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGGATC 12314 Query 118653 TTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCG 118712 || || || | ||||| |||||| | | ||||||||||| ||| | || || || Sbjct 12315 TTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 12374 Query 118713 GTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || || || || ||||||||| || Sbjct 12375 GTGAGGGTCTTCACGAAGATCTGCATGCCT 12404 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 118593 TGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATT 118652 || || || ||| ||||||| | |||||| || || || || ||||||||||| || Sbjct 10635 TGCTTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATC 10694 Query 118653 TTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCG 118712 || || || | ||||| |||||| | | ||||||||||| ||| | || || || Sbjct 10695 TTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 10754 Query 118713 GTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || || || || ||||||||| || Sbjct 10755 GTGAGGGTCTTCACGAAGATCTGCATGCCT 10784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433757657216536