Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq6555 86.0 1e-11 >seq6555 Length=16063 Score = 86.0 bits (94), Expect = 1e-11 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 248817 GTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAA 248876 |||| |||||||| ||||| || ||||||| ||| ||||| || || || ||||| || Sbjct 13693 GTACTCTTTCTTTGGATTCAAGACTCTGGAGAGATCATATCTACTGAAGATGGATGGAAA 13752 Query 248877 GATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGA 248936 || || || || |||||||||||| ||| |||| || | || || || ||| || Sbjct 13753 GACAGTAGAGAGACCTCAGCACATGTTAATGAGAGTAGCGATTGGAATCCATGGGGAGGA 13812 Query 248937 CATAGAGAGC-GTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCA 248995 ||||| ||| | | | ||||| ||| |||||||| | | | |||||||| Sbjct 13813 TATAGA-AGCAGCGATAGAGACATACGATATGATGAGTGAGAGATACTTCACACATGCAT 13871 Query 248996 CACCGACGCTCTTCAA 249011 | || || || ||||| Sbjct 13872 CGCCCACTCTTTTCAA 13887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073577122498944