Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5739 96.9 3e-15 seq9143 89.7 5e-13 seq9206 86.0 6e-12 seq6555 82.4 7e-11 >seq5739 Length=20024 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 23450 TCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGA 23509 || |||||||| ||||| || |||| || || || || |||| ||||| || |||||| Sbjct 454 TCAGCATGCCATGGCTCAAGATAAATAGCGAAAGCTCCGGGTCGTTTATTTCCACCCTGA 513 Query 23510 TCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 || ||||| ||||||||||||| ||||| | |||||||| ||||| || || || Sbjct 514 TCAACGTATTTGGCCGTGTTGTTGAACACTTTCAGCATCGGTACGAGTCCATTCGA 569 >seq9143 Length=31746 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 57794 TCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGT 57853 ||| ||||| || || ||| | ||||| || ||||| ||||| |||||||| |||||||| Sbjct 10094 TCAGGTGGCGATCGAGAACATCCATTCGGAGATGTACTCGCTGCTCATCGAGACGTACGT 10035 Query 57854 GAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGC 57913 ||||||| || || |||| | |||||||||| || | || || ||| || | Sbjct 10034 GAAGGACGCGGATGAAAAACACAAGTTGTTCAACGCCGTCAAGACCATCCCCATCATTGG 9975 Query 57914 CAAGAAGGCAGAGTGGTCAATC 57935 |||||||| || ||| || || Sbjct 9974 AAAGAAGGCTGATTGGGCACTC 9953 >seq9206 Length=19012 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || || || || || |||||| |||| || || | ||| Sbjct 12807 ATGCAAATTTTCGTCAAAACGCTCACCGGAAAGACCATCACCCTCGAGGTCGAGGCCTCC 12748 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| ||||| | || ||||||||| || | || ||||||||| Sbjct 12747 GACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAG 12688 Query 31313 CAGCGTCTAATATTCGCTGG 31332 ||| | || || |||||||| Sbjct 12687 CAGAGACTTATCTTCGCTGG 12668 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || || || |||||| |||| || || | || Sbjct 11491 CATGCAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAGGCCTC 11432 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||||| ||||| | || ||||||||| || | || |||||||| Sbjct 11431 CGACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCA 11372 Query 31312 GCAGCGTCTAATATTCGCTGG 31332 |||| | || || |||||||| Sbjct 11371 GCAGAGACTTATCTTCGCTGG 11351 >seq6555 Length=16063 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23768 GCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCC 23827 || || || ||||||| | ||| | || ||| || || || || || || || ||| Sbjct 13869 GCATGTGTGAAGTATCTCTCACTCATCATATCGTATGTCTCTATCGCTGCTTCTATATCC 13810 Query 23828 TCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACG 23887 || || || || || || || || | ||| | ||||| ||||||||||| || || Sbjct 13809 TCCCCATGGATTCCAATCGCTACTCTCATTAACATGTGCTGAGGTCTCTCTACTGTCTTT 13750 Query 23888 CCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTA 23947 || | || || | |||||||| | | || || || |||||||| | || | Sbjct 13749 CCATCCATCTTCAGTAGATATGATCTCTCCAGAGTCTTGAATCCAAAGAAAGAGTACGAA 13690 Query 23948 AAGTCACGATCGTGCACTATGGCCGAATTCAAACGGTA 23985 ||||| ||||||| ||||||||| ||||| | ||| || Sbjct 13689 AAGTCTCGATCGTACACTATGGCGGAATTGAGACGCTA 13652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445689739323360