Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6555 93.3 5e-14 seq11591 82.4 1e-10 >seq6555 Length=16063 Score = 93.3 bits (102), Expect = 5e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||||| ||| || | || || || || || || || || | ||| | | || | Sbjct 13896 GTTCCCGAATTGAAAAGAGTGGGCGATGCATGTGTGAAGTATCTCTCACTCATCATATCG 13837 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || ||||| || |||| ||||||||| ||| ||||| | || || | ||||||| Sbjct 13836 TATGTCTCTATCGCTGCTTCTATATCCTCCCCATGGATTCCAATCGCTACTCTCATTAAC 13777 Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842 |||||||||||||| || || | || | || |||| | || ||| | |||| | Sbjct 13776 ATGTGCTGAGGTCTCTCTACTGTCTTTCCATCCATCTTCAGTAGATATGATCTCTCCAGA 13717 Query 63843 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 || || || ||||| | ||| ||||||||||| ||||| | || | |||||||| Sbjct 13716 GTCTTGAATCCAAAGAAAGAGTACGAAAAGTCTCGATCGTACACTATGGCGGAATTGAG 13658 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 64028 CTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGT 64087 |||||||||||| || ||||| ||||| || || |||||||||||||| ||||| | || Sbjct 13427 CTTGTGTAGATTGGAGATGGCAATTCTAGCAGCAAGAATGGCATAATCGGGATGAAGAGT 13368 Query 64088 AGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATT 64147 ||| ||||| |||| ||||||||| |||||||||| ||| ||||| || Sbjct 13367 AGTCATTCCAGCTGCAGTTTCTGCTGCCAGATTGTCCAATTCACTCGTATCCACTCCTTT 13308 Query 64148 ATATA 64152 |||| Sbjct 13307 GTATA 13303 Score = 89.7 bits (98), Expect = 6e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 63002 |||| ||| || ||||| |||||||| || |||| ||| || ||||| | |||||| Sbjct 14902 GCAATAGACGCGAGATTGCACACGGCAACTTCATCGGCAGACGAATATTCAACGATCTCA 14843 Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062 ||||| | ||| || ||||| ||||| | ||| ||||||||||||||| || || Sbjct 14842 GTGCATAAATTGGAGCATTTGATCGTTCCAAGATTCTGTTGATTACTCTTTGAATTGCAT 14783 Query 63063 GCATCCT 63069 ||||||| Sbjct 14782 GCATCCT 14776 >seq11591 Length=11914 Score = 82.4 bits (90), Expect = 1e-10 Identities = 81/102 (79%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 |||||||||||||| || || | ||| || ||||| || |||| |||||| ||||| || Sbjct 10125 GTGAGTCCGGGCATGAGTCCTCTCTTCTTCAGCCAGAAAATGGCAGCGAAAGATCCCGAG 10066 Query 33696 AAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTC 33736 ||||| ||||| || || ||| || || ||||| | |||||| Sbjct 10065 AAGAATATTCCCTCAAC-GCACGCGAATGCAATCAATCTCTC 10025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629709287118240