Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq9143 111 2e-19 seq11591 93.3 6e-14 >seq9143 Length=31746 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 ||||||| |||| | ||||| || | ||| || | ||| | || ||||| ||| ||| Sbjct 9604 TGGATCGCTGACAAGAAGTCCTCCTTCGCTGAGCGTCTGATCGCTTTCGCGTGCGTCGAG 9545 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 ||||||||||| ||||| || ||||||||||| ||||| |||||| | ||||||||| Sbjct 9544 GGCATCTTCTTCTCGGGCTCGTTCGCGGCCATCTTCTGGCTGAAGAAGAGAGGACTCATG 9485 Query 125511 CCCGGACTGACGCA 125524 |||||||| || || Sbjct 9484 CCCGGACTCACTCA 9471 >seq11591 Length=11914 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 125406 AAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 ||||| || | ||| || ||| || | |||||||| ||| ||||| || ||||| ||| Sbjct 10010 AAGTCATCATTCGCTGAGAGATTGATTGCATTCGCGTGCGTTGAGGGAATATTCTTCTCG 10069 Query 125466 GGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || ||| || ||||| || ||||| |||||| | ||||||||||||||||| || || Sbjct 10070 GGATCTTTCGCTGCCATTTTCTGGCTGAAGAAGAGAGGACTCATGCCCGGACTCACTCA 10128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740931756344080