Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq11978 84.2 5e-11 >seq11978 Length=19871 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 104427 AAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACAT 104486 ||| || ||||| | || ||||| |||||||| ||||||||||||||||| || |||| Sbjct 1977 AAACTAATCTCTGCTTATTGGGAGGAATTCCTTCCTTATCCTGAATCTTTGCCTTCACAT 1918 Query 104487 TTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAA 104537 | || || ||||||| | || | || | ||||||||||| || |||| Sbjct 1917 TATCAACAGTATCGCAGCGCTCCGCTTCGATCGTAATAGTCTTGCCTGTAA 1867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151195437966664