Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq3082 159 2e-34 seq600 138 7e-28 seq9285 107 1e-18 >seq3082 Length=6667 Score = 159 bits (176), Expect = 2e-34 Identities = 247/343 (72%), Gaps = 11/343 (3%) Strand=Plus/Minus Query 22638 AACTTATTGATAGTGTT-TTATGTTCAGATAATGCCCGAT-GACT--TTGTCATGCAGCT 22693 || ||| ||||| || ||||||||||||||| | || |||| |||||||| | || Sbjct 6515 AATTTAGGGATAGCATTATTATGTTCAGATAATTC---ATCGACTCATTGTCATGGATCT 6459 Query 22694 CCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGAT 22753 || || | |||| |||||| |||||| || |||||||||||||||| || || ||| Sbjct 6458 CCGGGGACATCGAGAGCGACAGTGACTTCGGTACCAGCCGTGCCAGGTGTTGGTTCTGAT 6399 Query 22754 TCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCT 22813 || |||| |||| || ||||| | ||| | |||| || | || | Sbjct 6398 TCGTGTTAC-CCGCGCATTTCGCAGTGTAC-TGAAAAAAAGATTTTTTGGAATCTTGTAT 6341 Query 22814 TCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTG 22873 ||| || |||||||||||||| ||||| ||||||| || |||| |||||||| || Sbjct 6340 GCAGAAAAGAGTCATACAGCGGCCAACCATCTGTCATCCTTAACACCGAGTCAAAGGTTG 6281 Query 22874 ACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATCGTGCGTTCACCGAATACGTGCGCAA 22933 |||| | ||||| ||||||||||| ||| ||| | |||||| | || | |||| | Sbjct 6280 ACAGGCGTCTCATTAGACGCCCCAGTGTCAGCATAGCTCGTTCA-AAAGTAGGGGCGCGA 6222 Query 22934 CAACCGTCTTCCGGAGCCTGTCATACGCGTAAAACAGCCAGCG 22976 || || ||||| | | ||||||||||||||||| |||||| Sbjct 6221 -AATGCTCATCCGGTGACGGTCATACGCGTAAAACATCCAGCG 6180 >seq600 Length=2863 Score = 138 bits (152), Expect = 7e-28 Identities = 128/159 (81%), Gaps = 4/159 (3%) Strand=Plus/Plus Query 22719 CTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTG 22778 || || ||||| |||| ||| ||||||||| || ||||||||||| ||||||||| ||| Sbjct 2391 CTACCATCCCATTCGTGACAG-TGCTGCCTCCGAATCAGGTTATGCTGCTCAATTCCCTG 2449 Query 22779 CGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTC-AGGCGGGATTCATACAGCGGCC 22837 |||| || | ||| |||||||| || ||||||||||| || ||| ||| |||| Sbjct 2450 CGTAGATGGTTTGGTGATTACGCGCGGCTTTCCCTTCTAGTAACGAT--GAACACTGGCC 2507 Query 22838 AGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACA 22876 |||||| |||| | |||||||||||||||||||| |||| Sbjct 2508 AGCCATTCGTCGTTCATATCACCACGTCAAAGGGCGACA 2546 >seq9285 Length=40977 Score = 107 bits (118), Expect = 1e-18 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 22847 TCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCA 22906 |||| ||| ||| |||||||||| | |||||||| |||||||||| |||| ||||||| Sbjct 9 TCATTCATTTCAACACGTCAAAGTCTCACAGCAGGGTCATAAGACGATCCAGTGTCGCCA 68 Query 22907 TCGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGCCTGTCATACGCGTAAA 22966 | |||| ||||| |||| ||| ||| || ||||||| || | |||| | ||| Sbjct 69 TGGTGCATTCACGGAATG-GTGAGCAGCAGTT-TCTTCCGAAGAATCTCATGTTTGGAAA 126 Query 22967 ACAGCCAGCGCTGGCGCGATT 22987 ||||||||||||| ||||||| Sbjct 127 ACAGCCAGCGCTGACGCGATT 147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303184354848318