Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq9206 100 3e-16 seq11608 95.1 1e-14 seq12060 84.2 2e-11 seq6400 82.4 7e-11 >seq9206 Length=19012 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 || || ||| | ||||| | ||| |||||||| || ||||| || || ||||| | || Sbjct 10938 TGCTTACCGGCGAAGATGAGTCTCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGGATC 10997 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || ||||||||| ||| ||||| | | ||||| || | |||||||| |||||| Sbjct 10998 TTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 11057 Query 94982 GTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || ||||| ||||||||||||| Sbjct 11058 GTGAGGGTCTTCACGAAGATCTGCATGC 11085 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 || || ||| | ||||| | ||| |||||||| || ||||| || || ||||| | || Sbjct 12255 TGCTTACCGGCGAAGATGAGTCTCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGGATC 12314 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || ||||||||| ||| ||||| | | ||||| || | |||||||| |||||| Sbjct 12315 TTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 12374 Query 94982 GTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || ||||| ||||||||||||| Sbjct 12375 GTGAGGGTCTTCACGAAGATCTGCATGC 12402 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| | ||| ||||| || ||||| || || || ||||| | || || ||||||||| Sbjct 11357 AAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACG 11416 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 ||| ||||| | | ||||| || | |||||||| |||||||| || || ||| Sbjct 11417 TTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTC 11476 Query 94994 ACAAAGATCTGCATGC 95009 || ||||||||||||| Sbjct 11477 ACGAAGATCTGCATGC 11492 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| | ||||| | ||| ||||| || || || || || || ||||| | || || Sbjct 10335 TTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTG 10394 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||||||| ||| ||||| | | ||||| || | |||||||| |||||||| Sbjct 10395 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGTG 10454 Query 94985 AGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| ||||||||||||| Sbjct 10455 AGGGTCTTCACGAAGATCTGCATGC 10479 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 || || ||| | ||||| | ||| ||||| || || || || || || ||||| | || Sbjct 10635 TGCTTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATC 10694 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || ||||||||| ||| ||||| | | ||||| || | |||||||| |||||| Sbjct 10695 TTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 10754 Query 94982 GTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || ||||| ||||||||||||| Sbjct 10755 GTGAGGGTCTTCACGAAGATCTGCATGC 10782 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 || || ||| | ||||| | ||| ||||| || || || || || || ||||| | || Sbjct 11648 TGCTTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATC 11707 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || || |||||| ||| ||||| | | ||||| || | |||||||| |||||| Sbjct 11708 TTGGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 11767 Query 94982 GTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || ||||| ||||||||||||| Sbjct 11768 GTGAGGGTCTTCACGAAGATCTGCATGC 11795 >seq11608 Length=23747 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||| || || ||| | ||||| ||||| |||||||| || || || ||||| ||||| Sbjct 14103 TCCAATTGCTTACCGGCGAAGATCAATCTCTGCTGATCAGGGGGGATTCCTTCCTTGTCC 14044 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || || ||||||||| | | ||||| | | ||||| |||| |||||||| Sbjct 14043 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTC 13984 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || || || || ||||||||||| Sbjct 13983 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 13952 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 || || ||| | ||||| ||||| |||||||| || || || ||||| ||||| | || Sbjct 14703 TGCTTACCGGCGAAGATCAATCTCTGCTGATCAGGGGGGATTCCTTCCTTGTCCTGGATC 14644 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || ||||||||| | | ||||| | | ||||| |||| |||||||| || || Sbjct 14643 TTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCG 14584 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || ||||||||||| Sbjct 14583 GTGAGGGTCTTGACGAAGATCTGCAT 14558 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||| || || ||| | ||||| ||||| ||||| || || || || ||||| ||||| Sbjct 13497 TCCAATTGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCC 13438 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || || ||||||||| ||| ||||| | | ||||| || | |||||||| Sbjct 13437 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTC 13378 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || || ||||||||||| Sbjct 13377 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 13346 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||| || || ||| | ||||| ||||| ||||| || || || || ||||| ||||| Sbjct 13800 TCCAATTGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCC 13741 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || || ||||||||| | | ||||| | | ||||| || | |||||||| Sbjct 13740 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCTTCGACCTCTAGGGTGATGGTC 13681 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || || || || ||||||||||| Sbjct 13680 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 13649 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||| || || ||| | ||||| ||||| ||||| || || || || ||||| ||||| Sbjct 14406 TCCAATTGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCC 14347 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || || ||||||||| ||| ||||| | | ||||| || | |||||||| Sbjct 14346 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTC 14287 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || || ||||||||||| Sbjct 14286 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 14255 >seq12060 Length=31670 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 115610 TGCTCCAGGTGAGGATCGAACTCACAACCTTGGCATTATAAGTACCACGCGCT-GCCGAT 115668 ||||||| | ||||||||||||| | |||| |||||||||||||||||||||| || | Sbjct 15693 TGCTCCATGGGAGGATCGAACTCCCGACCTCGGCATTATAAGTACCACGCGCTAACCAAC 15752 Query 115669 TGCGCTACTGGAGCTTAC 115686 ||||| | ||||||| || Sbjct 15753 TGCGCCAATGGAGCTGAC 15770 >seq6400 Length=19599 Score = 82.4 bits (90), Expect = 7e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 115609 TTGCTCCAGGTGAGGATCGAACTCACAACCTTGGCATTATAAGTACCACGCGCT-GCCGA 115667 |||||||| | ||||||||||||| | |||| |||||||||||||||||||||| || | Sbjct 8470 TTGCTCCATGGGAGGATCGAACTCCCGACCTCGGCATTATAAGTACCACGCGCTAACCAA 8411 Query 115668 TTGCGCTACTGGAGC 115682 ||||| | |||||| Sbjct 8410 CTGCGCCAATGGAGC 8396 Score = 82.4 bits (90), Expect = 7e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 115610 TGCTCCAGGTGAGGATCGAACTCACAACCTTGGCATTATAAGTACCACGCGCT-GCCGAT 115668 ||||||| | ||||||||||||| | |||| |||||||||||||||||||||| || | Sbjct 11981 TGCTCCATGGGAGGATCGAACTCCCGACCTCGGCATTATAAGTACCACGCGCTAACCAAC 12040 Query 115669 TGCGCTACTGGAGCTTA 115685 ||||| | |||||| || Sbjct 12041 TGCGCCAATGGAGCATA 12057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448214105120880