Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq11838 179 6e-41 seq9415 179 6e-41 seq9275 179 6e-41 seq8442 179 6e-41 seq8285 179 6e-41 seq5947 179 6e-41 seq4191 179 6e-41 seq11757 118 2e-22 >seq11838 Length=51442 Score = 179 bits (198), Expect = 6e-41 Identities = 185/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 48672 GCCAAGCGCCATCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTATT 48613 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || || |||||||||||||||||| |||||||| | ||||||| |||| Sbjct 48612 CGCCGTCTCGCCCGCCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTATGAGGAGACC 48553 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | ||||| ||| ||| |||| ||| || || ||| |||| Sbjct 48552 CGTGGTGTCCTCAAGGTGTTCCTTGAGAACGTGATCCGTGACGCCGTCACCTACTGCGAG 48493 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | |||||||||||| ||||||| |||| || || | || || || ||| Sbjct 48492 CACGCCAAGAGAAAGACTGTCACCGCCATGGACGTCGTATACGCTCTCAAGCGCCAGGGC 48433 Query 16673 CG 16674 || Sbjct 48432 CG 48431 >seq9415 Length=29279 Score = 179 bits (198), Expect = 6e-41 Identities = 185/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 8704 GCCAAGCGCCATCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTATT 8645 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || || |||||||||||||||||| |||||||| | ||||||| |||| Sbjct 8644 CGCCGTCTCGCCCGCCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTATGAGGAGACC 8585 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | ||||| ||| ||| |||| ||| || || ||| |||| Sbjct 8584 CGCGGTGTCCTCAAGGTGTTCCTTGAGAACGTGATCCGTGACGCCGTCACCTACTGCGAG 8525 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | |||||||||||| ||||||| ||||||| || | || || || ||| Sbjct 8524 CACGCCAAGAGAAAGACTGTCACCGCCATGGACGTCGTCTACGCTCTCAAGCGCCAGGGC 8465 Query 16673 CG 16674 || Sbjct 8464 CG 8463 Score = 179 bits (198), Expect = 6e-41 Identities = 185/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 12026 GCCAAGCGCCATCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTATT 11967 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || || |||||||||||||||||| |||||||| | ||||||| |||| Sbjct 11966 CGCCGTCTCGCCCGCCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTATGAGGAGACC 11907 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | ||||| ||| ||| |||| ||| || || ||| |||| Sbjct 11906 CGCGGTGTCCTCAAGGTGTTCCTTGAGAACGTGATCCGTGACGCCGTCACCTACTGCGAG 11847 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | |||||||||||| ||||||| ||||||| || | || || || ||| Sbjct 11846 CACGCCAAGAGAAAGACTGTCACCGCCATGGACGTCGTCTACGCTCTCAAGCGCCAGGGC 11787 Query 16673 CG 16674 || Sbjct 11786 CG 11785 >seq9275 Length=23809 Score = 179 bits (198), Expect = 6e-41 Identities = 185/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 7859 GCCAAGCGCCATCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTATT 7800 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || || |||||||||||||||||| |||||||| | ||||||| |||| Sbjct 7799 CGCCGTCTCGCCCGCCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTATGAGGAGACC 7740 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | ||||| ||| ||| || | ||| || || ||| |||| Sbjct 7739 CGTGGTGTCCTCAAGGTGTTCCTTGAGAACGTGATTCGTGACGCCGTCACCTACTGCGAG 7680 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | |||||||||||| ||||||| ||||||| || | || || || ||| Sbjct 7679 CACGCCAAGAGAAAGACTGTCACCGCCATGGACGTCGTCTACGCTCTCAAGCGCCAGGGC 7620 Query 16673 CG 16674 || Sbjct 7619 CG 7618 >seq8442 Length=978 Score = 179 bits (198), Expect = 6e-41 Identities = 185/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 280 GCCAAGCGCCATCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTATT 221 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || || |||||||||||||||||| |||||||| | ||||||| |||| Sbjct 220 CGCCGTCTCGCCCGCCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTATGAGGAGACC 161 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | ||||| ||| ||| || | ||| || || ||| |||| Sbjct 160 CGTGGTGTCCTCAAGGTGTTCCTTGAGAACGTGATTCGTGACGCCGTCACCTACTGCGAG 101 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | |||||||||||| ||||||| ||||||| || | || || || ||| Sbjct 100 CACGCCAAGAGAAAGACTGTCACCGCCATGGACGTCGTCTACGCTCTCAAGCGCCAGGGC 41 Query 16673 CG 16674 || Sbjct 40 CG 39 >seq8285 Length=4754 Score = 179 bits (198), Expect = 6e-41 Identities = 185/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 1908 GCCAAGCGCCATCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTATT 1849 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || || |||||||||||||||||| |||||||| | ||||||| |||| Sbjct 1848 CGCCGTCTCGCCCGCCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTATGAGGAGACC 1789 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | ||||| ||| ||| || | ||| || || ||| |||| Sbjct 1788 CGTGGTGTCCTCAAGGTGTTCCTTGAGAACGTGATTCGTGACGCCGTCACCTACTGCGAG 1729 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | |||||||||||| ||||||| ||||||| || | || || || ||| Sbjct 1728 CACGCCAAGAGAAAGACTGTCACCGCCATGGACGTCGTCTACGCTCTCAAGCGCCAGGGC 1669 Query 16673 CG 16674 || Sbjct 1668 CG 1667 Score = 134 bits (148), Expect = 2e-27 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 4205 GCCAAGCGCCATCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTATT 4146 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || || |||||||||||||||||| |||||||| | ||||||| |||| Sbjct 4145 CGCCGTCTCGCCCGCCGTGGTGGAGTCAAGCGTATCTCTGGACTTATCTATGAGGAGACC 4086 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC 16596 |||| ||| | ||| | ||||| ||| ||| || | ||| || Sbjct 4085 CGTGGTGTCCTCAAGGTGTTCCTTGAGAACGTGATTCGTGACGC 4042 >seq5947 Length=16730 Score = 179 bits (198), Expect = 6e-41 Identities = 185/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 8276 GCCAAGCGCCATCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTATT 8217 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || || |||||||||||||||||| |||||||| | ||||||| |||| Sbjct 8216 CGCCGTCTCGCCCGCCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTATGAGGAGACC 8157 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | ||||| ||| ||| |||| ||| || || ||| |||| Sbjct 8156 CGTGGTGTCCTCAAGGTGTTCCTTGAGAACGTGATCCGTGACGCCGTCACCTACTGCGAG 8097 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| |||||| ||||||| ||||||| || | || || || ||| Sbjct 8096 CACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTACGCTCTCAAGCGCCAGGGC 8037 Query 16673 CG 16674 || Sbjct 8036 CG 8035 >seq4191 Length=1743 Score = 179 bits (198), Expect = 6e-41 Identities = 185/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 385 GCCAAGCGCCATCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTATT 326 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || || |||||||||||||||||| |||||||| | ||||||| |||| Sbjct 325 CGCCGTCTCGCCCGCCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTATGAGGAGACC 266 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | ||||| ||| ||| |||| ||| || || ||| |||| Sbjct 265 CGTGGTGTCCTCAAGGTGTTCCTTGAGAACGTGATCCGTGACGCCGTCACCTACTGCGAG 206 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | |||||||||||| ||||||| |||| || || | || || || ||| Sbjct 205 CACGCCAAGAGAAAGACTGTCACCGCCATGGACGTCGTATACGCTCTCAAGCGCCAGGGC 146 Query 16673 CG 16674 || Sbjct 145 CG 144 >seq11757 Length=39336 Score = 118 bits (130), Expect = 2e-22 Identities = 97/118 (82%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 25702 GCCAAGCGCCATCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTATT 25643 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || ||||| || || |||||||||||||||||| |||||||| | ||||||| |||| Sbjct 25642 CGCCGTCTCGCCCGCCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTATGAGGAGA 25585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79062620964294