Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6555 93.3 5e-14 seq11591 84.2 3e-11 >seq6555 Length=16063 Score = 93.3 bits (102), Expect = 5e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||||| ||| || | || || || || || || || || | ||| | | || | Sbjct 13896 GTTCCCGAATTGAAAAGAGTGGGCGATGCATGTGTGAAGTATCTCTCACTCATCATATCG 13837 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || ||||| || |||| ||||||||| ||| ||||| | || || | ||||||| Sbjct 13836 TATGTCTCTATCGCTGCTTCTATATCCTCCCCATGGATTCCAATCGCTACTCTCATTAAC 13777 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 |||||||||||||| || || |||| | || |||| | || ||| | |||| | Sbjct 13776 ATGTGCTGAGGTCTCTCTACTGTCTTTCCATCCATCTTCAGTAGATATGATCTCTCCAGA 13717 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850 || || || ||||| | ||| ||||||||||| ||||| | || | || ||||| Sbjct 13716 GTCTTGAATCCAAAGAAAGAGTACGAAAAGTCTCGATCGTACACTATGGCGGAATTGAG 13658 Score = 86.0 bits (94), Expect = 8e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 63977 CTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGT 64036 |||||||||||| || | ||| ||||| || || |||||||||||||| ||||| | || Sbjct 13427 CTTGTGTAGATTGGAGATGGCAATTCTAGCAGCAAGAATGGCATAATCGGGATGAAGAGT 13368 Query 64037 AGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATT 64096 ||| ||||| |||| ||||||||| |||||||||| ||| ||||| || Sbjct 13367 AGTCATTCCAGCTGCAGTTTCTGCTGCCAGATTGTCCAATTCACTCGTATCCACTCCTTT 13308 Query 64097 ATATA 64101 |||| Sbjct 13307 GTATA 13303 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 62892 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62951 |||| ||| || ||||| || ||||| || |||| ||| || ||||| | |||||| Sbjct 14902 GCAATAGACGCGAGATTGCACACGGCAACTTCATCGGCAGACGAATATTCAACGATCTCA 14843 Query 62952 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63011 ||||| | ||| || ||||| ||||| | ||| ||||||||||||||| || || Sbjct 14842 GTGCATAAATTGGAGCATTTGATCGTTCCAAGATTCTGTTGATTACTCTTTGAATTGCAT 14783 Query 63012 GCATCCT 63018 ||||||| Sbjct 14782 GCATCCT 14776 Score = 82.4 bits (90), Expect = 1e-10 Identities = 124/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 || || | |||||| || || || ||||| |||||||| | |||||||||| | | Sbjct 14551 TCAAATTTGTCTCCGAAACAATCTTCTAATCCGGGACATTCCTTGGGACACATCAGAGTC 14492 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63256 || || ||| | |||| ||||| || |||||||||||||| ||||| ||| || Sbjct 14491 CAATCAGAATCAGTTTCAACTCTCTTCATGAATAGATCAGGAATCCAGAGAGC-ATAGAA 14433 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63310 ||||| | | ||| | |||||| ||| |||||| || ||| | |||||| Sbjct 14432 GAGATCGCGAGCTCTTTCTTCCTCTCCTCCAGTATTCATTCGAAGTTGGAGGAA 14379 >seq11591 Length=11914 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 33340 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33399 || || || || ||| |||||||||||||| || || | ||| || ||||| || ||| Sbjct 10143 ATGAGCTCATTCGAATGAGTGAGTCCGGGCATGAGTCCTCTCTTCTTCAGCCAGAAAATG 10084 Query 33400 GAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTC 33458 | |||||| ||||| || ||||| ||||| || || ||| || || ||||| | |||||| Sbjct 10083 GCAGCGAAAGATCCCGAGAAGAATATTCCCTCAAC-GCACGCGAATGCAATCAATCTCTC 10025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622840068655280