Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq9206 84.2 2e-11 seq11608 82.4 7e-11 >seq9206 Length=19012 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | |||||||| | || ||| |||| ||||||||| | Sbjct 11083 ATGCAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAGGCCTCC 11024 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || || || || || ||||| Sbjct 11023 GACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAG 10964 Query 24111 CAGAGACTGATTTACGGCGGCAAGCA 24136 |||||||| || | || ||| ||||| Sbjct 10963 CAGAGACTCATCTTCGCCGGTAAGCA 10938 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | |||||||| | || ||| |||| ||||||||| | Sbjct 11793 ATGCAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAGGCCTCC 11734 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| ||||| ||||| || || || || || || || Sbjct 11733 GACACCATCGAAAACGTCAAAGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAG 11674 Query 24111 CAGAGACTGATTTACGGCGGCAAGCA 24136 |||||||| || | || ||| ||||| Sbjct 11673 CAGAGACTCATCTTCGCCGGTAAGCA 11648 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | |||||||| | || ||| |||| ||||||||| | Sbjct 12400 ATGCAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAGGCCTCC 12341 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || || || || || ||||| Sbjct 12340 GACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAG 12281 Query 24111 CAGAGACTGATTTACGGCGGCAAGCA 24136 |||||||| || | || ||| ||||| Sbjct 12280 CAGAGACTCATCTTCGCCGGTAAGCA 12255 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || ||||| | || ||| |||| ||||||||| | Sbjct 12807 ATGCAAATTTTCGTCAAAACGCTCACCGGAAAGACCATCACCCTCGAGGTCGAGGCCTCC 12748 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || || || |||||||| || Sbjct 12747 GACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAG 12688 Query 24111 CAGAGACTGAT 24121 |||||||| || Sbjct 12687 CAGAGACTTAT 12677 >seq11608 Length=23747 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || || || | || ||| |||| ||||||||| Sbjct 13345 AATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGGCCTC 13404 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 13405 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCTGACCA 13464 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAA 24137 |||||| |||| | || ||| |||||| Sbjct 13465 GCAGAGATTGATCTTCGCCGGTAAGCAA 13492 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || || || | || ||| |||| ||||||||| Sbjct 14254 AATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGGCCTC 14313 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 14314 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCTGACCA 14373 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAA 24137 |||||| |||| | || ||| |||||| Sbjct 14374 GCAGAGATTGATCTTCGCCGGTAAGCAA 14401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429863910212490