Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq11608 96.9 3e-15 seq9206 86.0 6e-12 >seq11608 Length=23747 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 131089 TGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATT 131148 ||||| || ||| |||| || | ||||||||| || ||||||||||| ||||| ||| Sbjct 13491 TGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATC 13432 Query 131149 TTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCG 131208 || ||||| | ||| | || |||| || ||||| |||| ||| | ||| || ||| Sbjct 13431 TTGGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCG 13372 Query 131209 GTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || ||||| |||||||| Sbjct 13371 GTGAGGGTCTTGACGAAGATCTGCAT 13346 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 131089 TGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATT 131148 ||||| || ||| |||| || | ||||||||| || ||||||||||| ||||| ||| Sbjct 14400 TGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATC 14341 Query 131149 TTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCG 131208 || ||||| | ||| | || |||| || ||||| |||| ||| | ||| || ||| Sbjct 14340 TTGGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCG 14281 Query 131209 GTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || ||||| |||||||| Sbjct 14280 GTGAGGGTCTTGACGAAGATCTGCAT 14255 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 131095 CCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC 131154 || ||| |||| || | ||||||||| || ||||||||||| ||||| ||| || | Sbjct 13144 CCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATCTTGGCC 13085 Query 131155 TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGA 131214 |||| | || | || |||| || ||||| |||| ||| | ||| |||||||| || Sbjct 13084 TTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTACCGGTGAGG 13025 Query 131215 GTTTTTACGAAAATCTGCATG 131235 || || ||||| || |||||| Sbjct 13024 GTCTTGACGAAGATTTGCATG 13004 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 131089 TGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATT 131148 ||||| || ||| |||| || | |||||| || || ||||||||||| ||||| ||| Sbjct 14703 TGCTTACCGGCGAAGATCAATCTCTGCTGATCAGGGGGGATTCCTTCCTTGTCCTGGATC 14644 Query 131149 TTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCG 131208 || ||||| | ||| | || |||| || ||||| || | ||| | ||| || ||| Sbjct 14643 TTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCG 14584 Query 131209 GTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || ||||| |||||||| Sbjct 14583 GTGAGGGTCTTGACGAAGATCTGCAT 14558 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 131089 TGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATT 131148 ||||| || ||| |||| || | ||||||||| || ||||||||||| ||||| ||| Sbjct 13794 TGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATC 13735 Query 131149 TTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCG 131208 || ||||| | ||| | || |||| || |||| || | ||| | ||| || || Sbjct 13734 TTGGCCTTGACGTTCTCAATGGTGTCGGAGGCTTCGACCTCTAGGGTGATGGTCTTGCCA 13675 Query 131209 GTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || ||||| |||||||| Sbjct 13674 GTGAGGGTCTTGACGAAGATCTGCAT 13649 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 131089 TGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATT 131148 ||||| || ||| |||| || | |||||| || || ||||||||||| ||||| ||| Sbjct 14097 TGCTTACCGGCGAAGATCAATCTCTGCTGATCAGGGGGGATTCCTTCCTTGTCCTGGATC 14038 Query 131149 TTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCG 131208 || ||||| | ||| | || |||| || ||||| || | ||| | ||| || || Sbjct 14037 TTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCA 13978 Query 131209 GTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || ||||| |||||||| Sbjct 13977 GTGAGGGTCTTGACGAAGATCTGCAT 13952 >seq9206 Length=19012 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 131095 CCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC 131154 || ||| |||| | | ||||||||| ||||||||||| || ||||| ||| || | Sbjct 12668 CCAGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 12727 Query 131155 TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGA 131214 |||| | || | || |||| || ||||| |||| ||| | ||| || ||||| || Sbjct 12728 TTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCGGTGAGC 12787 Query 131215 GTTTTTACGAAAATCTGCAT 131234 ||||| |||||||| ||||| Sbjct 12788 GTTTTGACGAAAATTTGCAT 12807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471931625598720