Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq11626 114 9e-21 seq980 93.3 3e-14 seq1450 84.2 1e-11 >seq11626 Length=18656 Score = 114 bits (126), Expect = 9e-21 Identities = 74/81 (91%), Gaps = 5/81 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 13754 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 13695 Query 25957 TAATCCTTTCATGCGCGTCAC 25977 |||||| |||||||||||||| Sbjct 13694 TAATCCATTCATGCGCGTCAC 13674 >seq980 Length=16305 Score = 93.3 bits (102), Expect = 3e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 ||| | |||||||||||||| ||||| ||| ||| ||||||||||| ||||| || Sbjct 7255 GACCCCTTCTACCGCTACAAGATGCCCAAGATCCTCGCGAAGGTCGAGGGCAAGGGCAAT 7314 Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314 || || || || ||||| | ||||||| | || | || ||||| |||| ||||| ||| Sbjct 7315 GGCATCAAGACGGTCATCGCCAACATGTCAGACATTGCGAAGGCCCTCGAGCGCCC-GCC 7373 Query 6315 A-CCTACCCGACGAA 6328 | ||||||| || || Sbjct 7374 ATCCTACCCCACCAA 7388 >seq1450 Length=1769 Score = 84.2 bits (92), Expect = 1e-11 Identities = 72/89 (81%), Gaps = 5/89 (6%) Strand=Plus/Minus Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCT 25963 ||||||||||||||||||| ||||||| || |||||| || ||| |||||||||| Sbjct 287 TTCCCTTGGCTGTGGTTTCACTAGATATTAAATAGGGACAGTGGGAATGTCGTTAATCCA 228 Query 25964 TTCATGCGCGTCACTAATTAGATGACGAT 25992 ||| ||| | ||||||||| | |||||| Sbjct 227 TTCCTGCCCATCACTAATTGAACGACGAT 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334891037518898