Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6555 93.3 5e-14 >seq6555 Length=16063 Score = 93.3 bits (102), Expect = 5e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||||| ||| || | || || || || || || || || | ||| | | || | Sbjct 13896 GTTCCCGAATTGAAAAGAGTGGGCGATGCATGTGTGAAGTATCTCTCACTCATCATATCG 13837 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || ||||| || |||| ||||||||| ||| ||||| | || || | ||||||| Sbjct 13836 TATGTCTCTATCGCTGCTTCTATATCCTCCCCATGGATTCCAATCGCTACTCTCATTAAC 13777 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 |||||||||||||| || || |||| | || |||| | || ||| | |||| | Sbjct 13776 ATGTGCTGAGGTCTCTCTACTGTCTTTCCATCCATCTTCAGTAGATATGATCTCTCCAGA 13717 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705 || || || ||||| | ||| ||||||||||| ||||| | || | || ||||| Sbjct 13716 GTCTTGAATCCAAAGAAAGAGTACGAAAAGTCTCGATCGTACACTATGGCGGAATTGAG 13658 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 63833 TTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTA 63892 ||||||||||| || | ||| |||||||| || |||||||||||||| ||||| | ||| Sbjct 13426 TTGTGTAGATTGGAGATGGCAATTCTAGCAGCAAGAATGGCATAATCGGGATGAAGAGTA 13367 Query 63893 GTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 63933 || ||||| |||| ||||||||| |||||||||| Sbjct 13366 GTCATTCCAGCTGCAGTTTCTGCTGCCAGATTGTCCAATTC 13326 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 62747 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62806 |||| ||| || ||||| || ||||| || |||| ||| || ||||| | |||||| Sbjct 14902 GCAATAGACGCGAGATTGCACACGGCAACTTCATCGGCAGACGAATATTCAACGATCTCA 14843 Query 62807 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 62866 ||||| | ||| || ||||| ||||| | ||| ||||||||||||||| || || Sbjct 14842 GTGCATAAATTGGAGCATTTGATCGTTCCAAGATTCTGTTGATTACTCTTTGAATTGCAT 14783 Query 62867 GCATCCT 62873 ||||||| Sbjct 14782 GCATCCT 14776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633523031136800