Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq11608 105 2e-17 >seq11608 Length=23747 Score = 105 bits (116), Expect = 2e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || ||||| || || |||||||||| | ||| || | ||||||||||| || ||| Sbjct 13497 TCCAATTGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCC 13438 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || || ||||| || || | ||| | || || ||||| ||||| ||| Sbjct 13437 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTC 13378 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| || ||||||||||| ||||||||| Sbjct 13377 TTGCCGGTGAGGGTCTTGACGAAGATCTGCATT 13345 Score = 105 bits (116), Expect = 2e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || ||||| || || |||||||||| | ||| || | ||||||||||| || ||| Sbjct 14406 TCCAATTGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCC 14347 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || || ||||| || || | ||| | || || ||||| ||||| ||| Sbjct 14346 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTC 14287 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| || ||||||||||| ||||||||| Sbjct 14286 TTGCCGGTGAGGGTCTTGACGAAGATCTGCATT 14254 Score = 104 bits (114), Expect = 6e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 ||||| || || |||||||||| | ||| ||| | ||||||||||| || |||||| Sbjct 14706 AATTGCTTACCGGCGAAGATCAATCTCTGCTGATCAGGGGGGATTCCTTCCTTGTCCTGG 14647 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 || || || || ||||| || || | ||| | || || || || ||||| ||||| Sbjct 14646 ATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTG 14587 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || ||||||||||| ||||||||| Sbjct 14586 CCGGTGAGGGTCTTGACGAAGATCTGCATT 14557 Score = 100 bits (110), Expect = 7e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || ||||| || || |||||||||| | ||| || | ||||||||||| || ||| Sbjct 13800 TCCAATTGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCC 13741 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || || ||||| || || | ||| | ||| || || || ||||| ||| Sbjct 13740 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCTTCGACCTCTAGGGTGATGGTC 13681 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || ||||||||||| ||||||||| Sbjct 13680 TTGCCAGTGAGGGTCTTGACGAAGATCTGCATT 13648 Score = 100 bits (110), Expect = 7e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || ||||| || || |||||||||| | ||| ||| | ||||||||||| || ||| Sbjct 14103 TCCAATTGCTTACCGGCGAAGATCAATCTCTGCTGATCAGGGGGGATTCCTTCCTTGTCC 14044 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || || ||||| || || | ||| | || || || || ||||| ||| Sbjct 14043 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTC 13984 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || ||||||||||| ||||||||| Sbjct 13983 TTGCCAGTGAGGGTCTTGACGAAGATCTGCATT 13951 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||||| | ||| || | ||||||||||| || |||||||| || || Sbjct 13144 CCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATCTTGGCC 13085 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || |||||||| || | ||| | || || ||||| ||||| ||||| ||||| || Sbjct 13084 TTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTACCGGTGAGG 13025 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||||||||| || ||||| Sbjct 13024 GTCTTGACGAAGATTTGCAT 13005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179446457157924