Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq9143 107 2e-18 seq11591 102 1e-16 >seq9143 Length=31746 Score = 107 bits (118), Expect = 2e-18 Identities = 114/150 (76%), Gaps = 3/150 (2%) Strand=Plus/Plus Query 126074 CGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAG 126133 || |||||||| ||||| || ||||| |||||||| || | |||||||| |||| Sbjct 9450 CGCGAGATGAGCTCATTGGAATGAGTGAGTCCGGGCATGAGTCCTCTCTTCTTCAGCCAG 9509 Query 126134 AAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGA 126193 || || || || || |||||||||||||| ||||| || |||||||| || | ||| Sbjct 9510 AAGATGGCCGCGAACGAGCCCGAGAAGAAGATGCCCTCGACGCACGCGAAAGCGATCAGA 9569 Query 126194 CGCTCAGCAAAGGAGCGCGACTTTGTGTCA 126223 |||||||| |||||| ||||| ||||| Sbjct 9570 CGCTCAGCGAAGGAG---GACTTCTTGTCA 9596 >seq11591 Length=11914 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 126074 CGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAG 126133 || |||||||| |||||||| ||||| |||||||| || | |||||||| |||| Sbjct 10149 CGCGAGATGAGCTCATTCGAATGAGTGAGTCCGGGCATGAGTCCTCTCTTCTTCAGCCAG 10090 Query 126134 AAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGA 126193 ||||| ||| || || ||||||||||| |||||||| || |||||||| |||| | Sbjct 10089 AAAATGGCAGCGAAAGATCCCGAGAAGAATATTCCCTCAACGCACGCGAATGCAATCAAT 10030 Query 126194 CGCTCAGCAAAGGA 126207 | |||||| || || Sbjct 10029 CTCTCAGCGAATGA 10016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597250870114640