Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq9206 100 3e-16 seq9143 87.8 2e-12 >seq9206 Length=19012 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 |||||| |||| | || |||||| |||||||| || |||||||||||| ||| || | Sbjct 12668 CCAGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 12727 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 |||| | ||||| |||||| | |||||| |||| ||| | || || ||||| || Sbjct 12728 TTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCGGTGAGC 12787 Query 127094 GTTTTTACAAAAATCTGCAT 127113 ||||| || ||||| ||||| Sbjct 12788 GTTTTGACGAAAATTTGCAT 12807 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 |||||| |||| | || |||||| |||||||| || |||||||||||| ||| || | Sbjct 11351 CCAGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 11410 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 |||| | ||||| |||||| | |||||| |||| ||| | || || || || || Sbjct 11411 TTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGTGAGG 11470 Query 127094 GTTTTTACAAAAATCTGCATGGCT 127117 || || || || ||||||||| || Sbjct 11471 GTCTTCACGAAGATCTGCATGCCT 11494 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 126968 TGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATT 127027 || || || ||| |||| | || ||||||||| || || || |||||||||||| ||| Sbjct 10938 TGCTTACCGGCGAAGATGAGTCTCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGGATC 10997 Query 127028 TTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCG 127087 || ||||| | ||||| |||||| | |||||| |||| ||| | || || || Sbjct 10998 TTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 11057 Query 127088 GTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || || || || || || ||||||||| || Sbjct 11058 GTGAGGGTCTTCACGAAGATCTGCATGCCT 11087 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 126968 TGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATT 127027 || || || ||| |||| | || ||||||||| || || || |||||||||||| ||| Sbjct 12255 TGCTTACCGGCGAAGATGAGTCTCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGGATC 12314 Query 127028 TTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCG 127087 || ||||| | ||||| |||||| | |||||| |||| ||| | || || || Sbjct 12315 TTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 12374 Query 127088 GTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || || || || || || ||||||||| || Sbjct 12375 GTGAGGGTCTTCACGAAGATCTGCATGCCT 12404 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 126968 TGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATT 127027 || || || ||| |||| | || |||||| || || || || |||||||||||| ||| Sbjct 10635 TGCTTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATC 10694 Query 127028 TTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCG 127087 || ||||| | ||||| |||||| | |||||| |||| ||| | || || || Sbjct 10695 TTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 10754 Query 127088 GTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || || || || || || ||||||||| || Sbjct 10755 GTGAGGGTCTTCACGAAGATCTGCATGCCT 10784 >seq9143 Length=31746 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCG 47192 || || ||| ||||||||||||| |||||||||| |||||||||||||| || ||| Sbjct 9577 GCTGAGCGTCTGATCGCTTTCGCGTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCGCG 9518 Query 47193 GCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTA 47252 || || || | |||| | | |||| | |||||||| ||||| | ||| ||||| Sbjct 9517 GCCATCTTCTGGCTGAAGAAGAGAGGACTCATGCCCGGACTCACTCATTCCAATGAGCTC 9458 Query 47253 ATCTCG 47258 |||||| Sbjct 9457 ATCTCG 9452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475419025749920