Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq9206 107 2e-18 seq9143 96.9 3e-15 >seq9206 Length=19012 Score = 107 bits (118), Expect = 2e-18 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||||||||| || || ||||||||| |||| ||||||||| || Sbjct 12807 ATGCAAATTTTCGTCAAAACGCTCACCGGAAAGACCATCACCCTCGAGGTCGAGGCCTCC 12748 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | || |||| ||||| |||||||| || ||||||| Sbjct 12747 GACACCATCGAAAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCA 12689 Query 38363 ACAGCGGCTCATTTACGCGGG 38383 ||| | || || | ||| || Sbjct 12688 GCAGAGACTTATCTTCGCTGG 12668 Score = 100 bits (110), Expect = 3e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || ||||||||| |||| ||||||||| || Sbjct 11083 ATGCAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAGGCCTCC 11024 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | || |||| ||||| |||||||||||| | || || Sbjct 11023 GACACCATCGAAAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCA 10965 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACA 38389 ||| | ||||| | ||| || || || Sbjct 10964 GCAGAGACTCATCTTCGCCGGTAAGCA 10938 Score = 100 bits (110), Expect = 3e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || ||||||||| |||| ||||||||| || Sbjct 12400 ATGCAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAGGCCTCC 12341 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | || |||| ||||| |||||||||||| | || || Sbjct 12340 GACACCATCGAAAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCA 12282 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACA 38389 ||| | ||||| | ||| || || || Sbjct 12281 GCAGAGACTCATCTTCGCCGGTAAGCA 12255 >seq9143 Length=31746 Score = 96.9 bits (106), Expect = 3e-15 Identities = 117/155 (75%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 132928 GAAATGAGTTCGTTGCTGAA--AGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAA 132985 || ||||| || ||| ||| ||| | ||||||||||| || | || || ||||| | Sbjct 9453 GAGATGAGCTCATTG--GAATGAGTGAGTCCGGGCATGAGTCCTCTCTTCTTCAGCCAGA 9510 Query 132986 ATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGC 133045 | ||||| ||||| |||||| ||||||| |||||||||| ||||||||| | ||| | Sbjct 9511 AGATGGCCGCGAACGAGCCCGAGAAGAAGATGCCCTCGACGCACGCGAAAGCGATCAGAC 9570 Query 133046 GCTCGCCGAACGTGG-CTTCTTTGCTGGCGATCCA 133079 |||| |||| | || |||| ||| |||||||| Sbjct 9571 GCTCAGCGAAGGAGGACTTC-TTGTCAGCGATCCA 9604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500086782782720