Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq11105 149 2e-30 seq9234 140 1e-27 seq184 140 1e-27 >seq11105 Length=19492 Score = 149 bits (164), Expect = 2e-30 Identities = 385/576 (67%), Gaps = 22/576 (4%) Strand=Plus/Plus Query 451910 GTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATA-----TGTTGTCTTCTTATTTTG 451964 || ||||| ||||| |||||||| | | | || || | || || |||||| | Sbjct 4289 GTTGGAGGATCTACTCGAATTCCAAGAGTACA-GAAACTTCTTGCTGACTTCTTC----G 4343 Query 451965 GAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAG 452024 ||||||| |||| |||| | || ||||| |||||||||||||| ||||| ||||||| Sbjct 4344 GAGGAAAGGAACTCTGTACTGGAGTCAATCCCGATGAAGCTGTTGCCTATGGAGCTGCAG 4403 Query 452025 TTCAAGCAGCTATTCTAACAGG--TTCAGATGATGAAAAATTAGGAGATATTCTGTTAGT 452082 | ||||| ||| ||||| |||| |||| || || | | |||| |||| | || Sbjct 4404 TACAAGCTGCTGTTCTATCAGGAGTTCAA--GACTCAACAGTCAAAGATGTTCTACTCGT 4461 Query 452083 AGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGAC-TAATTTAA 452141 ||||| | || || || | ||| | || || ||||| ||| | ||||| | | || Sbjct 4462 TGATGTTGCTCCACTTTCATTGGGAATCGAGACTGCTGGAGGAGTTATGACATCACTTGT 4521 Query 452142 TTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATA 452201 | | || | || ||||||| | | | | ||||| | || ||||| Sbjct 4522 CGATAGGAATA-CTCGTATTCCTACTCGAGCTATGAAGACATTCACCACTTATGCTGATA 4580 Query 452202 ACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATA 452261 | |||||||| || |||||||||| || ||||||||||| || | || |||||| Sbjct 4581 ATCAACCAGGAGTCTCTATTCAAGTCTTCGAAGGAGAACGAGCTCTTACCAAGGATAATC 4640 Query 452262 ATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAA 452321 || |||| ||| | || || || |||||||| | ||||| ||| ||||| | Sbjct 4641 ATCAACTTGGAAACTTCGAACTATCTGGAATTCCTCCAACACCAAGAGGAGTCCCTCAGA 4700 Query 452322 TTGAAATTACCTAT--GATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAA 452379 ||||| | | ||| || ||||||| ||||| ||||| ||||| |||| || || Sbjct 4701 TTGAAGT--CGTATTCGAGATTGATGCTAATGGAATTCTGGCTGTGACTGCAACGGATAA 4758 Query 452380 ATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAG 452438 || |||| ||| |||| ||| || || | ||||| || || || ||| | Sbjct 4759 GTCGACTGG-AAAGAAGAATGCAATCACTATCAAGAATGAAAAGGGACGATTGAGTAAGG 4817 Query 452439 AAGATATTGAAAAAATGGTAGATGAAGCAGAAAAAT 452474 |||| || || || ||||| | || |||| |||| Sbjct 4818 AAGAAATCGAGAAGATGGTTCAAGATGCAGCCAAAT 4853 >seq9234 Length=18122 Score = 140 bits (154), Expect = 1e-27 Identities = 383/575 (67%), Gaps = 20/575 (3%) Strand=Plus/Minus Query 451910 GTAGGAGGTTCTACACGAATTCCTAAAATTCA--AGATA--TGTTGTCTTCTTATTTTGG 451965 || ||||| ||||| |||||||| | | | || || | || || |||||| ||| Sbjct 5223 GTTGGAGGATCTACTCGAATTCCAAGAGTACAGAAGCTTCTTGCTGACTTCTT----TGG 5168 Query 451966 AGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGT 452025 |||||| |||| |||| | | ||||| |||||||||||||| ||||| |||||||| Sbjct 5167 AGGAAAGGAACTCTGTACTGGAATCAATCCCGATGAAGCTGTTGCCTATGGAGCTGCAGT 5108 Query 452026 TCAAGCAGCTATTCTAACAG--GTTCAGATGATGAAAAATTAGGAGATATTCTGTTAGTA 452083 ||||| ||| ||||| ||| |||| | || || | | |||| |||| | || Sbjct 5107 ACAAGCTGCTGTTCTATCAGGAGTTC--AAGACTCAACAGTCAAAGATGTTCTACTCGTT 5050 Query 452084 GATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGAC-TAATTTAAT 452142 ||||| | || || || | ||| | || || ||||| ||| | ||||| | | || Sbjct 5049 GATGTTGCTCCACTTTCATTGGGAATCGAGACTGCTGGAGGAGTTATGACATCACTTGTC 4990 Query 452143 TAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAA 452202 | | || ||| ||||||| | | | | ||||| || |||||| Sbjct 4989 GATAGGA-ATACTCGTATTCCTACTCGAGCTATGAAGACATTCTCCACTTATGCTGATAA 4931 Query 452203 CCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAA 452262 ||||| || ||| | |||||||| || ||||||||||| || | || |||||| | Sbjct 4930 TCAACCTGGAGTATCCATTCAAGTCTTCGAAGGAGAACGAGCTCTTACCAAGGATAATCA 4871 Query 452263 TAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAAT 452322 | |||| ||| | || || || ||||||||| ||||| ||| ||||| || Sbjct 4870 TCAACTTGGAAACTTCGAACTGTCTGGAATTCCTCCTGCTCCAAGAGGAGTCCCTCAGAT 4811 Query 452323 TGAAATTACCTAT--GATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAA 452380 |||| | | ||| || ||||||| ||||| ||||| ||||| ||| || || Sbjct 4810 TGAAGT--CGTATTCGAGATTGATGCTAATGGAATTCTGGCTGTGACTGCTACGGATAAG 4753 Query 452381 TCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGA 452439 ||| |||| ||| |||| ||| || || | ||||| || || || ||| || Sbjct 4752 TCAACTGG-AAAGAAGAATGCAATCACTATCAAGAATGAGAAGGGACGATTGAGTAAGGA 4694 Query 452440 AGATATTGAAAAAATGGTAGATGAAGCAGAAAAAT 452474 ||| || || || ||||| | || |||| |||| Sbjct 4693 AGAAATCGAGAAGATGGTTCAAGATGCAGCCAAAT 4659 >seq184 Length=15381 Score = 140 bits (154), Expect = 1e-27 Identities = 383/576 (66%), Gaps = 22/576 (4%) Strand=Plus/Plus Query 451910 GTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATA-----TGTTGTCTTCTTATTTTG 451964 || ||||| ||||| |||||||| | | | || || | || || |||||| || Sbjct 9483 GTTGGAGGATCTACTCGAATTCCAAGAGTACA-GAAACTTCTTGCTGACTTCTT----TG 9537 Query 451965 GAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAG 452024 ||||||| |||| |||| | | ||||| ||||||||||| || ||||| ||||||| Sbjct 9538 GAGGAAAGGAACTCTGTACTGGAATCAATCCCGATGAAGCTGTAGCCTATGGAGCTGCAG 9597 Query 452025 TTCAAGCAGCTATTCTAACAGG--TTCAGATGATGAAAAATTAGGAGATATTCTGTTAGT 452082 | ||||| ||| ||||| |||| |||| || || | | |||| |||| | || Sbjct 9598 TACAAGCTGCTGTTCTATCAGGAGTTCAA--GACTCAACAGTCAAAGATGTTCTACTCGT 9655 Query 452083 AGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGAC-TAATTTAA 452141 ||||| | || || || | ||| | || || ||||| ||| | ||||| | | || Sbjct 9656 TGATGTTGCTCCACTTTCATTGGGAATCGAGACTGCTGGAGGAGTTATGACATCACTTGT 9715 Query 452142 TTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATA 452201 | | || | || ||||||| | | | | ||||| || ||||| Sbjct 9716 CGATAGGAATA-CTCGTATTCCTACTCGAGCTATGAAGACATTCTCCACTTATGCTGATA 9774 Query 452202 ACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATA 452261 | |||||||| ||| | |||||||| || ||||||||||| || | || |||||| Sbjct 9775 ATCAACCAGGAGTATCCATTCAAGTCTTCGAAGGAGAACGAGCTCTTACCAAGGATAATC 9834 Query 452262 ATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAA 452321 || |||| ||| | || || || ||||||||| ||||| ||| ||||| | Sbjct 9835 ATCAACTTGGAAACTTCGAACTGTCTGGAATTCCTCCTGCTCCAAGAGGAGTCCCTCAGA 9894 Query 452322 TTGAAATTACCTAT--GATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAA 452379 ||||| | | ||| || ||||||| ||||| ||||| ||||| ||| || || Sbjct 9895 TTGAAGT--CGTATTCGAGATTGATGCTAATGGAATTCTGGCTGTGACTGCTACGGATAA 9952 Query 452380 ATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAG 452438 ||| |||| ||| |||| ||| || || | ||||| || || || ||| | Sbjct 9953 GTCAACTGG-AAAGAAGAATGCAATCACTATCAAGAATGAGAAGGGACGATTGAGTAAGG 10011 Query 452439 AAGATATTGAAAAAATGGTAGATGAAGCAGAAAAAT 452474 |||| || || || ||||| | || |||| |||| Sbjct 10012 AAGAAATCGAGAAGATGGTTCAAGATGCAGCCAAAT 10047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975370131473864