Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq9143 105 8e-18 seq11591 84.2 3e-11 >seq9143 Length=31746 Score = 105 bits (116), Expect = 8e-18 Identities = 105/134 (78%), Gaps = 4/134 (3%) Strand=Plus/Plus Query 119522 CCGAGAGATGAGCTCATTACTGAAGCAA--AGTCCAGGCATGAGTCCTCTTTTCTTTAGC 119579 ||| |||||||||||||| ||| | ||||| |||||||||||||| ||||| ||| Sbjct 9449 CCGCGAGATGAGCTCATTG--GAATGAGTGAGTCCGGGCATGAGTCCTCTCTTCTTCAGC 9506 Query 119580 CAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAAT 119639 || |||||||| || || || |||||||||||||| || || |||||||||| Sbjct 9507 CAGAAGATGGCCGCGAACGAGCCCGAGAAGAAGATGCCCTCGACGCACGCGAAAGCGATC 9566 Query 119640 AGACGCTCAGCAAA 119653 ||||||||||| || Sbjct 9567 AGACGCTCAGCGAA 9580 >seq11591 Length=11914 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/134 (75%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 119522 CCGAGAGATGAGCTCATTACTGAAGCAA--AGTCCAGGCATGAGTCCTCTTTTCTTTAGC 119579 ||| |||||||||||||| ||| | ||||| |||||||||||||| ||||| ||| Sbjct 10150 CCGCGAGATGAGCTCATTC--GAATGAGTGAGTCCGGGCATGAGTCCTCTCTTCTTCAGC 10093 Query 119580 CAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAAT 119639 || || |||||| ||| ||| || ||||| || ||||| || || ||||| || | Sbjct 10092 CAGAAAATGGCAGCGAAAGATCCCGAGAAGAATATTCCCTCAACGCACGCGAATGCAATC 10033 Query 119640 AGACGCTCAGCAAA 119653 | | |||||| || Sbjct 10032 AATCTCTCAGCGAA 10019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588874710852400