Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq11608 98.7 2e-15 seq9206 98.7 2e-15 seq11767 93.3 9e-14 >seq11608 Length=23747 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 |||||||| |||||||| | || || ||||| || || || ||||| ||||| || || Sbjct 13794 TGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATC 13735 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 || ||||||||||||||||||||| || ||| || || ||||| | ||||| || Sbjct 13734 TTGGCCTTGACGTTCTCAATGGTGTCGGAGGCTTCGACCTCTAGGGTGATGGTCTTGCCA 13675 Query 195115 GTCAAAGTTTTTACGAACACTTGCATT 195141 || | || || ||||| | |||||| Sbjct 13674 GTGAGGGTCTTGACGAAGATCTGCATT 13648 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 |||||||| |||||||| | || || || || || || || ||||| ||||| || || Sbjct 14097 TGCTTACCGGCGAAGATCAATCTCTGCTGATCAGGGGGGATTCCTTCCTTGTCCTGGATC 14038 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 || ||||||||||||||||||||| || || || |||||||| | ||||| || Sbjct 14037 TTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCA 13978 Query 195115 GTCAAAGTTTTTACGAACACTTGCATT 195141 || | || || ||||| | |||||| Sbjct 13977 GTGAGGGTCTTGACGAAGATCTGCATT 13951 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 |||||||| |||||||| | || || || || || || || ||||| ||||| || || Sbjct 14703 TGCTTACCGGCGAAGATCAATCTCTGCTGATCAGGGGGGATTCCTTCCTTGTCCTGGATC 14644 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 || ||||||||||||||||||||| || || || |||||||| | ||||| || Sbjct 14643 TTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCG 14584 Query 195115 GTCAAAGTTTTTACGAACACTTGCATT 195141 || | || || ||||| | |||||| Sbjct 14583 GTGAGGGTCTTGACGAAGATCTGCATT 14557 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 |||||||| |||||||| | || || ||||| || || || ||||| ||||| || || Sbjct 13491 TGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATC 13432 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 || |||||||||||| |||||||| || || || || ||||| | ||||| || Sbjct 13431 TTGGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCG 13372 Query 195115 GTCAAAGTTTTTACGAACACTTGCATT 195141 || | || || ||||| | |||||| Sbjct 13371 GTGAGGGTCTTGACGAAGATCTGCATT 13345 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 |||||||| |||||||| | || || ||||| || || || ||||| ||||| || || Sbjct 14400 TGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATC 14341 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 || |||||||||||| |||||||| || || || || ||||| | ||||| || Sbjct 14340 TTGGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCG 14281 Query 195115 GTCAAAGTTTTTACGAACACTTGCATT 195141 || | || || ||||| | |||||| Sbjct 14280 GTGAGGGTCTTGACGAAGATCTGCATT 14254 >seq9206 Length=19012 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| ||||||||||||| || ||||| ||||| || || || ||||| || || || Sbjct 12664 CTAACCAGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTT 12723 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || |||||||| || || || || ||||| | |||||||| || Sbjct 12724 GGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCGGT 12783 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | |||||| Sbjct 12784 GAGCGTTTTGACGAAAATTTGCAT 12807 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| ||||||||||||| || ||||| ||||| || || || ||||| || || || Sbjct 11347 CTAACCAGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTT 11406 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || |||||||| || || || || ||||| | |||||||| || Sbjct 11407 GGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGT 11466 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 11467 GAGGGTCTTCACGAAGATCTGCAT 11490 >seq11767 Length=21069 Score = 93.3 bits (102), Expect = 9e-14 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 160567 CCTGATGAG--AGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAG 160624 ||||||||| ||| |||| ||||||| || |||||| | ||||||| ||||||||| Sbjct 21034 CCTGATGAGCGAGCTCGAGATCTTTTCTATGCTCTCTGGATTCCCGATCTCTTCATGAAG 20975 Query 160625 AGAGTGAAAGACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGAT 160684 ||||| ||| ||| || |||| ||| | |||||||| ||| || ||||| ||| Sbjct 20974 AGAGTTGAAGCTGATGCCGAATGGACTCTTATGTGTCCCAAGGAATGTCCCGGACTGGAT 20915 Query 160685 GATGTTTATGGTTCCGAGTTCGAGA 160709 || |||||| |||||||||| Sbjct 20914 GACTGCTATGGTGAAGAGTTCGAGA 20890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109286026824386