Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq9206 93.3 3e-14 >seq9206 Length=19012 Score = 93.3 bits (102), Expect = 3e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34828 CATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34887 || ||| || || ||||| || || |||| |||||||| | || | |||||||||| Sbjct 11640 CAACCAAATGCTTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGT 11699 Query 34888 CGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 | ||||| ||||||| | | || | || |||||| || |||| ||| |||| Sbjct 11700 CCTGGATCTTGGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGG 11759 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| ||||| |||||||| ||||||||||| Sbjct 11760 TCTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 11793 Score = 89.7 bits (98), Expect = 3e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34828 CATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34887 || ||| || || ||||| || || |||| |||||||| | || | |||||||||| Sbjct 10627 CAACCAAATGCTTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGT 10686 Query 34888 CGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 | ||||| |||||| | | || | || |||||| || |||| ||| |||| Sbjct 10687 CCTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGG 10746 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| ||||| |||||||| ||||||||||| Sbjct 10747 TCTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 10780 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898 || ||||| || || |||| |||||||| | || | ||||||||||| ||||| Sbjct 10335 TTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTG 10394 Query 34899 TGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTG 34958 |||||| | | || | || |||||| || |||| ||| ||||| ||||| ||| Sbjct 10395 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGTG 10454 Query 34959 AGAGTCTTCACAAAGATCTGCAT 34981 || |||||||| ||||||||||| Sbjct 10455 AGGGTCTTCACGAAGATCTGCAT 10477 Score = 84.2 bits (92), Expect = 1e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34828 CATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34887 || ||| || || ||||| || || |||| ||||| || | || | |||||||||| Sbjct 10930 CAACCAAATGCTTACCGGCGAAGATGAGTCTCTGCTGATCAGGGGGAATTCCCTCCTTGT 10989 Query 34888 CGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 | ||||| |||||| | | || | || |||||| || |||| ||| |||| Sbjct 10990 CCTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGG 11049 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| ||||| |||||||| ||||||||||| Sbjct 11050 TCTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 11083 Score = 84.2 bits (92), Expect = 1e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34828 CATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34887 || ||| || || ||||| || || |||| ||||| || | || | |||||||||| Sbjct 12247 CAACCAAATGCTTACCGGCGAAGATGAGTCTCTGCTGATCAGGGGGAATTCCCTCCTTGT 12306 Query 34888 CGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 | ||||| |||||| | | || | || |||||| || |||| ||| |||| Sbjct 12307 CCTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGG 12366 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| ||||| |||||||| ||||||||||| Sbjct 12367 TCTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 12400 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34842 CCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT 34901 || || || || |||| |||||||| | || | ||||||||||| ||||| Sbjct 11351 CCAGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 11410 Query 34902 TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGA 34961 |||||| | | || | || |||||| || |||| ||| ||||| ||||| ||||| Sbjct 11411 TTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGTGAGG 11470 Query 34962 GTCTTCACAAAGATCTGCAT 34981 |||||||| ||||||||||| Sbjct 11471 GTCTTCACGAAGATCTGCAT 11490 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898 || ||||| || || |||| |||||||| | || | ||||||||||| ||||| Sbjct 11955 TTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTG 12014 Query 34899 TGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTG 34958 |||||| | | || | || |||||| || |||| ||| ||||| ||||| ||| Sbjct 12015 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGTG 12074 Query 34959 AGAGTCTTCACAAAGATCTGCAT 34981 || |||||||| ||||| ||||| Sbjct 12075 AGGGTCTTCACGAAGATTTGCAT 12097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324579166858224