Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6555 113 5e-20 >seq6555 Length=16063 Score = 113 bits (124), Expect = 5e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 48302 CATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACC 48361 ||| |||||||||||||||||||| | ||| ||||| | | | ||||||| ||||| || Sbjct 14326 CATGATATCAGCATGCCATGGTTCGAGATAGATTGCGAATGCTCCTGGTCTCTTATTTCC 14267 Query 48362 TCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATT 48421 ||||||||| | |||| | ||||||||||| | |||| | ||| || |||| ||||| Sbjct 14266 TCCTTGATCCACATATTTCGCAGTATTGTTGAATACTCGAAGCATGGGAACAAGTCCATT 14207 Query 48422 TGATATACCATTGGT 48436 || ||||||| || Sbjct 14206 CGAAGTACCATTAGT 14192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562012131339120