Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq184 206 2e-47 seq9234 203 3e-46 seq11105 188 6e-42 >seq184 Length=15381 Score = 206 bits (228), Expect = 2e-47 Identities = 483/718 (67%), Gaps = 22/718 (3%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 |||||||| | | |||||||| || |||||||| || || | | ||||| || || Sbjct 9249 GCTCTTCGAAGATTGAGAACTGCATGTGAAAGAGCGAAGAGAACATTATCATCAAGTGCT 9308 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTT-- 552012 || | |||||||| |||||| | ||| ||| |||| ||| || ||| | || Sbjct 9309 GAAGCTGTGATTGAAGTTGATTCACTTCATGAAGGAGTTGACTATCAT--GCCAAGTTGA 9366 Query 552013 CGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAG 552072 | | || ||| ||||| | ||| ||||||| || | || ||| | |||||||| | Sbjct 9367 CACGAGCTCGATTCGAAGAATTGTGTGCTGATCTATTCCGGAAGACATTGGAACCAGTGG 9426 Query 552073 AACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTG 552132 || | | | ||||| | ||||| |||||||| | || || | || | |||| Sbjct 9427 AAAAGGCCCTTCGAGATGCTAAGATGGATAAATCATCGATTCAAGACGTCGTATTGGTTG 9486 Query 552133 GTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTT--CTTATTTCAATGGTAA 552190 | |||||||| ||||||| | | | | |||| | | | ||| ||| | || || Sbjct 9487 GAGGATCTACTCGAATTCCAAGAGTACA-GAAACTTCTTGCTGACTTCTTTGGA-GGAAA 9544 Query 552191 AAAATTA---AATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCA 552247 || | | || || | ||||| ||||| ||||| |||||||| || ||| | || Sbjct 9545 GGAACTCTGTACTGGAA---TCAATCCCGATGAAGCTGTAGCCTATGGAGCTGCAGTACA 9601 Query 552248 AGCAGCTATTCTTTCTGGA---CAAACTGATGAAAAACTACAAAATATTGTACTTGTAGA 552304 ||| ||| |||| || ||| ||| || || | | || || || |||| || || Sbjct 9602 AGCTGCTGTTCTATCAGGAGTTCAA---GACTCAACAGTCAAAGATGTTCTACTCGTTGA 9658 Query 552305 TGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGA 552364 |||| |||| || || | || | || || | |||||| ||||||| ||| |||| Sbjct 9659 TGTTGCTCCACTTTCATTGGGAATCGAGACTGCTGGAGGAGTTATGACATCACTTGTCGA 9718 Query 552365 TAGAAATACTACTATTCCTTGTAAAAAATCTCGTGT-ATTTTCTACGTATTCAGATAATC 552423 ||| |||||| ||||||| | | | | | ||| || || ||| | ||||||| Sbjct 9719 TAGGAATACTCGTATTCCTACTCGAGC-TATGAAGACATTCTCCACTTATGCTGATAATC 9777 Query 552424 AAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATC 552483 || | | || | |||||| | || ||||||||| || | || || |||||| ||| Sbjct 9778 AACCAGGAGTATCCATTCAAGTCTTCGAAGGAGAACGAGCTCTTACCAAGGATAATCATC 9837 Query 552484 AACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTG 552543 ||||||| | || | | || |||||||||||||| | ||||| || || |||| Sbjct 9838 AACTTGGAAACTTCGAACTGTCTGGAATTCCTCCTGCTCCAAGAGGAGTCCCTCAGATTG 9897 Query 552544 AAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 |||| ||||| || ||||| ||||||||| || |||||||||| ||||| || Sbjct 9898 AAGTCGTATTCGAGATTGATGCTAATGGAATTCTGGCTGTGACTGCTACGGATAAGTC 9955 Score = 105 bits (116), Expect = 5e-17 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||| || ||||| || |||||||| || || || || || ||||| ||||| || ||||| Sbjct 8891 GGAAGCTGTAATTACCGTACCAGCGTACTTCAACGATTCTCAACGACAAGCAACGAAAGA 8950 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| | | || |||| || || ||| ||||| ||||||||||| || |||||||| Sbjct 8951 TGCAGCAACCATCTCTGGTCTCAAGTGTCTACGTATCATCAATGAACCGACAGCTGCTGC 9010 Query 550516 ACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTG 550575 | | ||||||||| | || || || | ||| ||||| || ||||||||| Sbjct 9011 ATTGGCATATGGATTGGACAAGAATCTATCTGGAGAGAGAAATGTGCTGATCTTTGATCT 9070 Query 550576 TGGAGG 550581 |||||| Sbjct 9071 TGGAGG 9076 >seq9234 Length=18122 Score = 203 bits (224), Expect = 3e-46 Identities = 482/717 (67%), Gaps = 20/717 (3%) Strand=Plus/Minus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 |||||||| | | |||||||| || |||||||| || || | | ||||| || || Sbjct 5457 GCTCTTCGAAGATTGAGAACTGCATGTGAAAGAGCGAAGAGAACATTATCATCAAGTGCT 5398 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTT-- 552012 || | |||||||| |||||| | ||| ||| |||| ||| || ||| | || Sbjct 5397 GAAGCTGTGATTGAAGTTGATTCACTTCATGAAGGAGTTGACTATCAT--GCCAAGTTGA 5340 Query 552013 CGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAG 552072 | | || ||| ||||| | ||| ||||||| || | || ||| | |||||||| | Sbjct 5339 CACGAGCTCGATTCGAAGAATTGTGTGCTGATCTATTCCGGAAGACATTGGAACCAGTGG 5280 Query 552073 AACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTG 552132 | | | | ||||| | ||||| ||||||| | || || | || | |||| Sbjct 5279 AGAAGGCCCTTCGAGATGCTAAGATGAATAAATCATCGATTCAAGACGTCGTATTGGTTG 5220 Query 552133 GTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAA 552192 | |||||||| ||||||| | | | | ||| | | | || | ||| ||| | | Sbjct 5219 GAGGATCTACTCGAATTCCAAGAGTACA-GAA--GCTTCTTGCTGACTTCTTTGG-AGGA 5164 Query 552193 AATTAAATGAA-AGTG---TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAA 552248 || || | | || | ||||| ||||| |||||||||||||| || ||| | ||| Sbjct 5163 AAGGAACTCTGTACTGGAATCAATCCCGATGAAGCTGTTGCCTATGGAGCTGCAGTACAA 5104 Query 552249 GCAGCTATTCTTTCTGGA---CAAACTGATGAAAAACTACAAAATATTGTACTTGTAGAT 552305 || ||| |||| || ||| ||| || || | | || || || |||| || ||| Sbjct 5103 GCTGCTGTTCTATCAGGAGTTCAA---GACTCAACAGTCAAAGATGTTCTACTCGTTGAT 5047 Query 552306 GTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGAT 552365 ||| |||| || || | || | || || | |||||| ||||||| ||| ||||| Sbjct 5046 GTTGCTCCACTTTCATTGGGAATCGAGACTGCTGGAGGAGTTATGACATCACTTGTCGAT 4987 Query 552366 AGAAATACTACTATTCCTTGTAAAAAATCTCGTGT-ATTTTCTACGTATTCAGATAATCA 552424 || |||||| ||||||| | | | | | ||| || || ||| | |||||||| Sbjct 4986 AGGAATACTCGTATTCCTACTCGAGC-TATGAAGACATTCTCCACTTATGCTGATAATCA 4928 Query 552425 AACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCA 552484 | ||| || | |||||| | || ||||||||| || | || || |||||| |||| Sbjct 4927 ACCTGGAGTATCCATTCAAGTCTTCGAAGGAGAACGAGCTCTTACCAAGGATAATCATCA 4868 Query 552485 ACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGA 552544 |||||| | || | | || |||||||||||||| | ||||| || || ||||| Sbjct 4867 ACTTGGAAACTTCGAACTGTCTGGAATTCCTCCTGCTCCAAGAGGAGTCCCTCAGATTGA 4808 Query 552545 AGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 ||| ||||| || ||||| ||||||||| || |||||||||| ||||| || Sbjct 4807 AGTCGTATTCGAGATTGATGCTAATGGAATTCTGGCTGTGACTGCTACGGATAAGTC 4751 Score = 114 bits (126), Expect = 1e-19 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || || || ||| | || || || ||| ||||||||| || | || ||||| Sbjct 6661 AGCAATCGGCATCGATCTGGGGACGACTTATTCTTGTGTTGGAGTCTACCAGAATGGACG 6602 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||||||||| || || || |||||||| |||| || ||||| || || ||| | |||| Sbjct 6601 AGTTGAAATCATCGCGAACGATCAAGGAAACAAGACCACTCCTTCCTACGTTGCATTCAA 6542 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || ||||| | ||||||||| | || || ||||||| | | ||||| ||| Sbjct 6541 TGATGATGAACGACTTGTTGGTGATTCTGCCAAGGATCAAGCTGCAAGGAATCCAGTCAA 6482 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAG 550203 |||||| |||||||||||| | | || ||||| Sbjct 6481 TACTATCTTTGATGCTAAAAGACTCATCGGAAG 6449 Score = 96.9 bits (106), Expect = 3e-14 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||| || || || || ||||| ||||| || || || || ||||| ||||| || ||||| Sbjct 5815 GGAAGCCGTGATTACCGTACCTGCATACTTCAACGATTCTCAACGACAAGCAACGAAAGA 5756 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| | | || |||| || || ||| ||||| ||||||||||| || |||||||| Sbjct 5755 TGCAGCAACCATCTCTGGTCTCAAGTGTCTACGTATCATCAATGAACCCACAGCTGCTGC 5696 Query 550516 ACTTGCATATGGACTTGATAA 550536 | | ||||||||| | || || Sbjct 5695 ATTGGCATATGGATTGGACAA 5675 >seq11105 Length=19492 Score = 188 bits (208), Expect = 6e-42 Identities = 470/706 (67%), Gaps = 22/706 (3%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 |||||||| | | |||||||| || |||||||| || || | || ||||| || || Sbjct 4055 GCTCTTCGAAGATTGAGAACTGCATGTGAAAGAGCGAAGAGAACACTATCATCAAGTGCT 4114 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTT-- 552012 || | |||||||| |||||| | ||| ||| |||| ||| || ||| | || Sbjct 4115 GAAGCTGTGATTGAAGTTGATTCACTTCATGAAGGAGTTGACTATCAT--GCCAAGTTGA 4172 Query 552013 CGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAG 552072 | | || ||| ||||| | ||| ||||||| || | || ||| | |||||||| | Sbjct 4173 CACGAGCTCGATTCGAAGAATTGTGTGCTGATCTATTCCGGAAGACATTGGAACCAGTGG 4232 Query 552073 AACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTG 552132 | | | | ||||| | ||||| || ||||| | || || | || | |||| Sbjct 4233 AGAAGGCCCTTCGAGATGCTAAGATGGACAAATCATCGATTCAAGACGTCGTATTGGTTG 4292 Query 552133 GTGGATCTACAAGAATTCCTAAAATTCGCGAAA-----TGTTAAGTTCTTATTTCAATGG 552187 | |||||||| ||||||| | | | | |||| || | | ||||| | || Sbjct 4293 GAGGATCTACTCGAATTCCAAGAGTACA-GAAACTTCTTGCTGACTTCTT----CGGAGG 4347 Query 552188 TAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCA 552247 || || | | | || ||||| ||||| |||||||||||||| || ||| | || Sbjct 4348 AAAGGAACTCTGTACTGGAGTCAATCCCGATGAAGCTGTTGCCTATGGAGCTGCAGTACA 4407 Query 552248 AGCAGCTATTCTTTCTGGA---CAAACTGATGAAAAACTACAAAATATTGTACTTGTAGA 552304 ||| ||| |||| || ||| ||| || || | | || || || |||| || || Sbjct 4408 AGCTGCTGTTCTATCAGGAGTTCAA---GACTCAACAGTCAAAGATGTTCTACTCGTTGA 4464 Query 552305 TGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGA 552364 |||| |||| || || | || | || || | |||||| ||||||| ||| |||| Sbjct 4465 TGTTGCTCCACTTTCATTGGGAATCGAGACTGCTGGAGGAGTTATGACATCACTTGTCGA 4524 Query 552365 TAGAAATACTACTATTCCTTGT-AAAAAATCTCGTGTATTTTCTACGTATTCAGATAATC 552423 ||| |||||| ||||||| | | || | ||| | || ||| | ||||||| Sbjct 4525 TAGGAATACTCGTATTCCTACTCGAGCTATGAAG-ACATTCACCACTTATGCTGATAATC 4583 Query 552424 AAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATC 552483 || | | || | |||||| | || ||||||||| || | || || |||||| ||| Sbjct 4584 AACCAGGAGTCTCTATTCAAGTCTTCGAAGGAGAACGAGCTCTTACCAAGGATAATCATC 4643 Query 552484 AACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTG 552543 ||||||| | || | || || |||||||| | || | ||||| || || |||| Sbjct 4644 AACTTGGAAACTTCGAACTATCTGGAATTCCTCCAACACCAAGAGGAGTCCCTCAGATTG 4703 Query 552544 AAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 |||| ||||| || ||||| ||||||||| || ||||||||| Sbjct 4704 AAGTCGTATTCGAGATTGATGCTAATGGAATTCTGGCTGTGACTGC 4749 Score = 102 bits (112), Expect = 7e-16 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||| || || || || |||||||| || || || || || ||||| ||||| || ||||| Sbjct 3697 GGAAGCTGTGATTACCGTACCAGCGTACTTCAACGATTCTCAACGACAAGCAACGAAAGA 3756 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| | | || |||| || || ||| ||||| ||||||||||| || |||||||| Sbjct 3757 TGCAGCAACCATCTCTGGTCTCAAGTGTCTACGTATCATCAATGAACCGACAGCTGCTGC 3816 Query 550516 ACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTG 550575 | | ||||||||| | || || || | ||| ||||| || ||||||||| Sbjct 3817 ATTGGCATATGGATTGGACAAGAATCTATCTGGAGAGAGAAATGTGCTGATCTTTGATCT 3876 Query 550576 TGGAGG 550581 |||||| Sbjct 3877 TGGAGG 3882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028568414911420