Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq9143 87.8 3e-12 >seq9143 Length=31746 Score = 87.8 bits (96), Expect = 3e-12 Identities = 98/123 (80%), Gaps = 6/123 (5%) Strand=Plus/Minus Query 25876 GAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGC 25934 ||||| ||| | || || || ||| || ||||||||||| ||| || ||||| ||||| Sbjct 9574 GAGCGTCTGATCGCTTTCGCGTGC-GTCGAGGGCATCTTCTTCTCGGGCTCGTTCGCGGC 9516 Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACT-TTTCCAACGAGCTC 25992 |||||||||||| ||| || || |||| ||||||||| || ||| |||||| |||||| Sbjct 9515 CATCTTCTGGCTGAAGAAG-AGAGGACTCATGCCCGGACT-CACTCATTCCAATGAGCTC 9458 Query 25993 ATC 25995 ||| Sbjct 9457 ATC 9455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928685061915520