Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq11455 127 2e-23 seq11757 123 3e-22 seq9415 122 1e-21 seq8285 122 1e-21 seq5947 118 1e-20 seq9275 113 6e-19 seq11838 109 7e-18 seq9143 89.7 6e-12 seq11420 86.0 8e-11 >seq11455 Length=31463 Score = 127 bits (140), Expect = 2e-23 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | ||| ||||| ||||| |||||||| ||||| | || Sbjct 235 GCTTGGCAAGCTCTCCAGGGAGGATGAGGCGGACGGCCGTCTGGATTTCGCGAGAAGAGA 176 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| |||| || |||||| |||||| | |||| | |||| | Sbjct 175 TGGTCGATCGCTTGTTGTAGTGAGCGAGACGGGAGGCCTCACCGGCGATTCTCTCGAAGA 116 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||||| |||||| | |||| ||| | || |||||||| Sbjct 115 CGTCGTTAACGAACGAGTTCATGATCGACATGGCCTTGGAGGAAACTCCAGTGTCGGGGT 56 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | ||||||||||| || ||||||| | ||||||||| Sbjct 55 GAACCTGCTTGAGGACACGGTAGATGTAGACCGAGTACGA 16 >seq11757 Length=39336 Score = 123 bits (136), Expect = 3e-22 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254357 CCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTG 1254416 ||| | | ||| ||||| ||||| |||||||| ||||| | | |||||| |||||| Sbjct 19208 CCGGGAAGGATGAGGCGGACGGCCGTCTGGATTTCGCGAGAGGAGATCGTCGATCGCTTG 19149 Query 1254417 TTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAAC 1254476 || |||| || ||||| |||||| | |||| | |||| | ||| || || ||| Sbjct 19148 TTGTAGTGAGCGAGACGAGAAGCCTCGCCGGCGATTCTCTCGAAGACGTCATTCACGAAC 19089 Query 1254477 GAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGC 1254536 |||||||||| |||||| | |||| ||| | || ||||||||| ||||||||||| Sbjct 19088 GAGTTCATGATCGACATGGCCTTGGAGGAAACTCCGGTGTCGGGGTGAACCTGCTTGAGG 19029 Query 1254537 ACCTTGTAGATGAACGACGAGTACGA 1254562 || ||||||| || |||||| || Sbjct 19028 ACACGGTAGATGTACACCGAGTAGGA 19003 >seq9415 Length=29279 Score = 122 bits (134), Expect = 1e-21 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | ||| ||||| || || |||||||| ||||| | || Sbjct 10153 GCTTGGCAAGCTCTCCGGGGAGGATGAGGCGGACCGCCGTCTGGATTTCGCGAGAAGAGA 10212 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| |||| || |||||| |||||| | |||| | |||| | Sbjct 10213 TGGTCGATCGCTTGTTGTAGTGAGCGAGACGGGAGGCCTCACCGGCGATTCTCTCGAAGA 10272 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||||| |||||| | |||| ||| | || |||||||| Sbjct 10273 CGTCGTTCACGAACGAGTTCATGATCGACATGGCCTTGGAGGAAACTCCGGTGTCGGGGT 10332 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | ||||||||||| || ||||||| | |||||| || Sbjct 10333 GAACCTGCTTGAGGACACGGTAGATGTAGACCGAGTAGGA 10372 >seq8285 Length=4754 Score = 122 bits (134), Expect = 1e-21 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | ||| ||||| || || |||||||| ||||| | || Sbjct 3360 GCTTGGCAAGCTCTCCGGGGAGGATGAGGCGGACCGCCGTCTGGATTTCGCGAGAAGAGA 3419 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| |||| || |||||| |||||| | |||| | |||| | Sbjct 3420 TGGTCGATCGCTTGTTGTAGTGAGCGAGACGGGAGGCCTCACCGGCGATTCTCTCGAAGA 3479 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||||| |||||| | |||| ||| | || |||||||| Sbjct 3480 CGTCGTTCACGAACGAGTTCATGATCGACATGGCCTTGGAGGAAACTCCGGTGTCGGGGT 3539 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | ||||||||||| || ||||||| | |||||| || Sbjct 3540 GAACCTGCTTGAGGACACGGTAGATGTAGACCGAGTAGGA 3579 Score = 107 bits (118), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 1254365 GATCAGGC-GCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGT 1254423 ||| |||| | || || |||||||| ||||| | ||| || |||||||| ||| Sbjct 85 GATGAGGCCGTACCGCCGTCTGGATTTCGCGAGAAGAGATGGTCGATCGCTTGTTGTAGT 144 Query 1254424 GCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1254483 | || |||||| |||||| | |||| | |||| | |||||| || |||||||||| Sbjct 145 GAGCGAGACGGGAGGCCTCACCGGCGATTCTCTCGAAGACGTCGTTCACGAACGAGTTCA 204 Query 1254484 TGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1254543 ||| |||||| | |||| ||| | || ||||||||| ||||||||||| || || Sbjct 205 TGATCGACATGGCCTTGGAGGAAACTCCGGTGTCGGGGTGAACCTGCTTGAGGACACGGT 264 Query 1254544 AGATGAACGACGAGTACGA 1254562 ||||| | |||||| || Sbjct 265 AGATGTAGACCGAGTAGGA 283 >seq5947 Length=16730 Score = 118 bits (130), Expect = 1e-20 Identities = 158/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | ||| ||||| || || |||||||| ||||| | || Sbjct 5613 GCTTGGCAAGCTCTCCGGGGAGGATGAGGCGGACCGCCGTCTGGATTTCGCGAGAAGAGA 5672 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| |||| || |||||| |||||| | |||| | |||| | Sbjct 5673 TGGTCGATCGCTTGTTGTAGTGAGCGAGACGGGAGGCCTCACCGGCGATTCTCTCGAAGA 5732 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || || |||||||||| |||||| | |||| ||| | || |||||||| Sbjct 5733 CGTCGTTCACGAAAGAGTTCATGATCGACATAGCCTTGGAGGAAACTCCGGTGTCGGGGT 5792 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | ||||||||||| || ||||||| | |||||| || Sbjct 5793 GAACCTGCTTGAGGACACGGTAGATGTAGACCGAGTAGGA 5832 >seq9275 Length=23809 Score = 113 bits (124), Expect = 6e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | ||| ||||| || || |||||||| ||||| | || Sbjct 6028 GCTTGGCAAGCTCTCCGGGGAGGATGAGGCGGACCGCCGTCTGGATTTCGCGAGAAGAGA 6087 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| |||| || ||||| ||||| | |||| | |||| | Sbjct 6088 TGGTCGATCGCTTGTTGTAGTGAGCGAGACGAGAAGCCTCACCGGCGATTCTCTCGAAGA 6147 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||||| |||||| | |||| ||| | || |||||||| Sbjct 6148 CGTCGTTCACGAACGAGTTCATGATCGACATGGCCTTGGAGGAAACTCCGGTGTCGGGGT 6207 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | ||||||||||| || ||||||| | |||||| || Sbjct 6208 GAACCTGCTTGAGGACACGGTAGATGTAGACCGAGTAGGA 6247 >seq11838 Length=51442 Score = 109 bits (120), Expect = 7e-18 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | ||| ||||| || || |||||||| ||||| | || Sbjct 50140 GCTTGGCAAGCTCTCCGGGGAGGATGAGGCGGACCGCCGTCTGGATTTCGCGAGAAGAGA 50199 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| |||| || ||||| ||||| | |||| | |||| | Sbjct 50200 TGGTCGATCGCTTGTTGTAGTGAGCGAGACGAGAAGCCTCACCGGCGATTCTCTCGAAGA 50259 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || || |||||||||| |||||| | |||| ||| | || |||||||| Sbjct 50260 CGTCGTTCACGAAAGAGTTCATGATCGACATGGCCTTGGAGGAAACTCCGGTGTCGGGGT 50319 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | ||||||||||| || ||||||| | |||||| || Sbjct 50320 GAACCTGCTTGAGGACACGGTAGATGTAGACCGAGTAGGA 50359 >seq9143 Length=31746 Score = 89.7 bits (98), Expect = 6e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 869215 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAA 869274 ||| ||||||||||| || | |||||| ||||| |||||||| ||| ||||||||| Sbjct 9476 GAGTCCGGGCATGAGTCCTCTCTTCTTCAGCCAGAAGATGGCCGCGAACGAGCCCGAGAA 9535 Query 869275 AAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGG 869321 ||||||||||||||| || || |||| || ||||| || |||| Sbjct 9536 GAAGATGCCCTCGACGCACGCGAAAGCGATCAGACGCTCAGCGAAGG 9582 >seq11420 Length=60368 Score = 86.0 bits (94), Expect = 8e-11 Identities = 90/116 (78%), Gaps = 3/116 (3%) Strand=Plus/Plus Query 733152 GAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCAC 733211 || |||||||| | || | | ||| ||| ||||||||||||| | |||||||||||| Sbjct 25755 GAAGACATGCCGT--TCAC-GTGCGAGGGCATCACGCCCGACATCATCATCAACCCGCAC 25811 Query 733212 GCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCCCTCCTGGGCAAGGT 733267 ||| |||| || || ||||| || ||| | || ||||| ||||| ||||||||| Sbjct 25812 GCCGTCCCCTCTCGAATGACGATTGGCCATTTGATCGAGTGCCTCCAGGGCAAGGT 25867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106010154091286