Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq11608 89.7 5e-13 >seq11608 Length=23747 Score = 89.7 bits (98), Expect = 5e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || ||||| || || ||| || Sbjct 13346 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGGCCTCC 13405 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| |||||||| || || || || Sbjct 13406 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCTGACCAG 13465 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGA 24855 || | |||||||| ||||| || || |||| Sbjct 13466 CAGAGATTGATCTTCGCCGGTAAGCAATTGGA 13497 Score = 89.7 bits (98), Expect = 5e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || ||||| || || ||| || Sbjct 14255 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGGCCTCC 14314 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| |||||||| || || || || Sbjct 14315 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCTGACCAG 14374 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGA 24855 || | |||||||| ||||| || || |||| Sbjct 14375 CAGAGATTGATCTTCGCCGGTAAGCAATTGGA 14406 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || || ||| || Sbjct 14558 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGGCCTCC 14617 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| |||||||| || || ||||| Sbjct 14618 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCTGATCAG 14677 Query 24824 CAACGTTTGATCTTTGCCGGGAAACA 24849 || | |||||||| ||||| || || Sbjct 14678 CAGAGATTGATCTTCGCCGGTAAGCA 14703 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || |||||| || Sbjct 13649 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTAGAGGTCGAAGCCTCC 13708 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| |||||||| || || || || Sbjct 13709 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCTGACCAG 13768 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGA 24855 || | |||||||| ||||| || || |||| Sbjct 13769 CAGAGATTGATCTTCGCCGGTAAGCAATTGGA 13800 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| || Sbjct 13952 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGGCCTCC 14011 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| |||||||| || || ||||| Sbjct 14012 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCTGATCAG 14071 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGA 24855 || | |||||||| ||||| || || |||| Sbjct 14072 CAGAGATTGATCTTCGCCGGTAAGCAATTGGA 14103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449820228860240