Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq980 109 5e-19 >seq980 Length=16305 Score = 109 bits (120), Expect = 5e-19 Identities = 137/185 (74%), Gaps = 5/185 (3%) Strand=Plus/Minus Query 34476 CTTTGTCGGGTAA-ATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGA 34534 ||| || ||||| ||||| || || | || ||||| || || || | ||||||| ||| Sbjct 7389 CTTGGTGGGGTAGGATGGCGGG-CGCTCGAGGGCCTTCGCAATGTCTGACATGTTGGCGA 7331 Query 34535 TGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGT 34594 |||| ||||||||||| |||||||| || |||||||| ||| ||| ||||| |||| Sbjct 7330 TGACCGTCTTGATGCCATTGCCCTTGCCCTCGACCTTCGCGAGGATCTTGGGCATCTTGT 7271 Query 34595 AGCGGTAGAACGCGTCCGCCACATTGCGGTTAACGTTCACAGTCCCCATCGTGGCTGGTG 34654 |||||||||| | ||| || |||||| ||||| | || |||| || | || || Sbjct 7270 AGCGGTAGAAGGGGTCGAGGACTCCGCGGTTCACGTTGATAG---CCATTGTTGATGCTG 7214 Query 34655 TTACT 34659 || || Sbjct 7213 TTGCT 7209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412772376526694