Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq11455 168 1e-35 seq9415 165 1e-34 seq8285 165 1e-34 seq5947 161 2e-33 seq9275 156 7e-32 seq11838 152 8e-31 seq11757 102 1e-15 seq11420 95.1 2e-13 >seq11455 Length=31463 Score = 168 bits (186), Expect = 1e-35 Identities = 195/261 (75%), Gaps = 4/261 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||| || || || | | Sbjct 274 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCAAGCTCTCCAGGGA 215 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 ||| ||||| ||||| |||||||| ||||| | ||| || |||||||| ||| Sbjct 214 GGATGAGGCGGACGGCCGTCTGGATTTCGCGAGAAGAGATGGTCGATCGCTTGTTGTAGT 155 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || ||| |||||| | |||| | |||| | |||||| || |||||||| Sbjct 154 GAGCG--AGACGGGAGGCCTCACCGGCGATTCTCTCGAAGACGTCGTTAACGAACGAGTT 97 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||||||||| | ||| ||| | || ||||||||| ||||||||||| || Sbjct 96 CATGATCGACATGGCCTTGGAGGAAACTCCAGTGTCGGGGTGAACCTGCTTGAGGACACG 37 Query 1485708 GTAAACAAAGGACGAGTACGA 1485728 ||| | || ||||||||| Sbjct 36 GTAGATGTAGACCGAGTACGA 16 >seq9415 Length=29279 Score = 165 bits (182), Expect = 1e-34 Identities = 180/237 (76%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||| || || ||| | | Sbjct 10114 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCAAGCTCTCCGGGGA 10173 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 ||| ||||| || || |||||||| ||||| | ||| || ||||||| |||| Sbjct 10174 GGATGAGGCGGACCGCCGTCTGGATTTCGCGAGAAGAGATGGTCGATCGCTTGTTGTAGT 10233 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || ||| |||||| | |||| | |||| | |||||| || |||||||| Sbjct 10234 GAGCG--AGACGGGAGGCCTCACCGGCGATTCTCTCGAAGACGTCGTTCACGAACGAGTT 10291 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||| | ||| ||| | || ||||||||| ||||||||||| || Sbjct 10292 CATGATCGACATGGCCTTGGAGGAAACTCCGGTGTCGGGGTGAACCTGCTTGAGGAC 10348 >seq8285 Length=4754 Score = 165 bits (182), Expect = 1e-34 Identities = 180/237 (76%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||| || || ||| | | Sbjct 3321 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCAAGCTCTCCGGGGA 3380 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 ||| ||||| || || |||||||| ||||| | ||| || ||||||| |||| Sbjct 3381 GGATGAGGCGGACCGCCGTCTGGATTTCGCGAGAAGAGATGGTCGATCGCTTGTTGTAGT 3440 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || ||| |||||| | |||| | |||| | |||||| || |||||||| Sbjct 3441 GAGCG--AGACGGGAGGCCTCACCGGCGATTCTCTCGAAGACGTCGTTCACGAACGAGTT 3498 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||| | ||| ||| | || ||||||||| ||||||||||| || Sbjct 3499 CATGATCGACATGGCCTTGGAGGAAACTCCGGTGTCGGGGTGAACCTGCTTGAGGAC 3555 Score = 113 bits (124), Expect = 7e-19 Identities = 172/239 (72%), Gaps = 7/239 (3%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGAC-GGCGTGCCTGGCCAGTTCGCCGCGC 1485528 ||||| |||||||||||||||| || | ||||| |||| || || | || | || Sbjct 24 TGTACGTGGTGACGGCCTTGGTGCCTGCAGAGACTGGCGAGC-TGTCAAGCTATCCCGAG 82 Query 1485529 ATGATCAGGC-GCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--A 1485585 | ||| |||| | || || |||||||| ||||| | ||| || |||||||| | Sbjct 83 AGGATGAGGCCGTACCGCCGTCTGGATTTCGCGAGAAGAGATGGTCGATCGCTTGTTGTA 142 Query 1485586 GTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAG 1485645 ||| ||| || ||| |||||| | |||| | |||| | |||||| || |||||| Sbjct 143 GTGAGCG--AGACGGGAGGCCTCACCGGCGATTCTCTCGAAGACGTCGTTCACGAACGAG 200 Query 1485646 TTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||||| | ||| ||| | || ||||||||| ||||||||||| || Sbjct 201 TTCATGATCGACATGGCCTTGGAGGAAACTCCGGTGTCGGGGTGAACCTGCTTGAGGAC 259 >seq5947 Length=16730 Score = 161 bits (178), Expect = 2e-33 Identities = 179/237 (76%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||| || || ||| | | Sbjct 5574 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCAAGCTCTCCGGGGA 5633 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 ||| ||||| || || |||||||| ||||| | ||| || ||||||| |||| Sbjct 5634 GGATGAGGCGGACCGCCGTCTGGATTTCGCGAGAAGAGATGGTCGATCGCTTGTTGTAGT 5693 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || ||| |||||| | |||| | |||| | |||||| || || ||||| Sbjct 5694 GAGCG--AGACGGGAGGCCTCACCGGCGATTCTCTCGAAGACGTCGTTCACGAAAGAGTT 5751 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||| | ||| ||| | || ||||||||| ||||||||||| || Sbjct 5752 CATGATCGACATAGCCTTGGAGGAAACTCCGGTGTCGGGGTGAACCTGCTTGAGGAC 5808 >seq9275 Length=23809 Score = 156 bits (172), Expect = 7e-32 Identities = 178/237 (75%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||| || || ||| | | Sbjct 5989 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCAAGCTCTCCGGGGA 6048 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 ||| ||||| || || |||||||| ||||| | ||| || ||||||| |||| Sbjct 6049 GGATGAGGCGGACCGCCGTCTGGATTTCGCGAGAAGAGATGGTCGATCGCTTGTTGTAGT 6108 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || ||||| | |||| | |||| | |||||| || |||||||| Sbjct 6109 GAGCG--AGACGAGAAGCCTCACCGGCGATTCTCTCGAAGACGTCGTTCACGAACGAGTT 6166 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||| | ||| ||| | || ||||||||| ||||||||||| || Sbjct 6167 CATGATCGACATGGCCTTGGAGGAAACTCCGGTGTCGGGGTGAACCTGCTTGAGGAC 6223 >seq11838 Length=51442 Score = 152 bits (168), Expect = 8e-31 Identities = 177/237 (75%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||| || || ||| | | Sbjct 50101 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCAAGCTCTCCGGGGA 50160 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 ||| ||||| || || |||||||| ||||| | ||| || ||||||| |||| Sbjct 50161 GGATGAGGCGGACCGCCGTCTGGATTTCGCGAGAAGAGATGGTCGATCGCTTGTTGTAGT 50220 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || ||||| | |||| | |||| | |||||| || || ||||| Sbjct 50221 GAGCG--AGACGAGAAGCCTCACCGGCGATTCTCTCGAAGACGTCGTTCACGAAAGAGTT 50278 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||| | ||| ||| | || ||||||||| ||||||||||| || Sbjct 50279 CATGATCGACATGGCCTTGGAGGAAACTCCGGTGTCGGGGTGAACCTGCTTGAGGAC 50335 >seq11757 Length=39336 Score = 102 bits (112), Expect = 1e-15 Identities = 134/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 1485523 CCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTG 1485582 ||| | | ||| ||||| ||||| |||||||| ||||| | | |||||| |||||| Sbjct 19208 CCGGGAAGGATGAGGCGGACGGCCGTCTGGATTTCGCGAGAGGAGATCGTCGATCGCTTG 19149 Query 1485583 TT--AGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAA 1485640 || |||| ||| || || |||||| | |||| | |||| | ||| || || | Sbjct 19148 TTGTAGTGAGCG--AGACGAGAAGCCTCGCCGGCGATTCTCTCGAAGACGTCATTCACGA 19091 Query 1485641 ACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGA 1485700 ||||||||||||||||||| | ||| ||| | || ||||||||| |||||||||| Sbjct 19090 ACGAGTTCATGATCGACATGGCCTTGGAGGAAACTCCGGTGTCGGGGTGAACCTGCTTGA 19031 Query 1485701 GCAC 1485704 | || Sbjct 19030 GGAC 19027 >seq11420 Length=60368 Score = 95.1 bits (104), Expect = 2e-13 Identities = 92/116 (79%), Gaps = 3/116 (3%) Strand=Plus/Plus Query 653717 GAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGACATCGTCATCAACCCGCAC 653776 || || ||||||| || | | ||| |||| ||||||||||||| |||||||||||||| Sbjct 25755 GAAGACATGCCGT--TCAC-GTGCGAGGGCATCACGCCCGACATCATCATCAACCCGCAC 25811 Query 653777 GCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCCCTCCTGGGCAAGGT 653832 ||| |||| || || ||||| || ||| | |||| ||| ||||| ||||||||| Sbjct 25812 GCCGTCCCCTCTCGAATGACGATTGGCCATTTGATCGAGTGCCTCCAGGGCAAGGT 25867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914782898789762