Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq9206 113 3e-20 seq11608 98.7 6e-16 >seq9206 Length=19012 Score = 113 bits (124), Expect = 3e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 34832 TGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATT 34891 ||||| ||||||||||| |||| |||||||| | || | ||||||||||| | || Sbjct 11648 TGCTTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATC 11707 Query 34892 TTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCC 34951 || ||||||| | | || | || ||||||||| || | ||| ||||||||||| Sbjct 11708 TTGGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 11767 Query 34952 GTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||||||||| || |||||||||||| Sbjct 11768 GTGAGGGTCTTCACGAAGATCTGCATG 11794 Score = 107 bits (118), Expect = 1e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 34832 TGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATT 34891 ||||| ||||||||||| |||| |||||||| | || | ||||||||||| | || Sbjct 10635 TGCTTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATC 10694 Query 34892 TTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCC 34951 || |||||| | | || | || ||||||||| || | ||| ||||||||||| Sbjct 10695 TTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 10754 Query 34952 GTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||||||||| || |||||||||||| Sbjct 10755 GTGAGGGTCTTCACGAAGATCTGCATG 10781 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 34832 TGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATT 34891 ||||| ||||||||||| |||| ||||| || | || | ||||||||||| | || Sbjct 10938 TGCTTACCGGCGAAGATGAGTCTCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGGATC 10997 Query 34892 TTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCC 34951 || |||||| | | || | || ||||||||| || | ||| ||||||||||| Sbjct 10998 TTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 11057 Query 34952 GTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||||||||| || |||||||||||| Sbjct 11058 GTGAGGGTCTTCACGAAGATCTGCATG 11084 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 34832 TGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATT 34891 ||||| ||||||||||| |||| ||||| || | || | ||||||||||| | || Sbjct 12255 TGCTTACCGGCGAAGATGAGTCTCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGGATC 12314 Query 34892 TTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCC 34951 || |||||| | | || | || ||||||||| || | ||| ||||||||||| Sbjct 12315 TTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 12374 Query 34952 GTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||||||||| || |||||||||||| Sbjct 12375 GTGAGGGTCTTCACGAAGATCTGCATG 12401 Score = 102 bits (112), Expect = 5e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 34835 TTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTT 34894 || ||||||||||| |||| |||||||| | || | ||||||||||| | || || Sbjct 10335 TTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTG 10394 Query 34895 TGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTG 34954 |||||| | | || | || ||||||||| || | ||| ||||||||||| ||| Sbjct 10395 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGTG 10454 Query 34955 AGGGTCTTTACAAAGATCTGCATG 34978 |||||||| || |||||||||||| Sbjct 10455 AGGGTCTTCACGAAGATCTGCATG 10478 Score = 98.7 bits (108), Expect = 6e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 34835 TTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTT 34894 || ||||||||||| |||| |||||||| | || | ||||||||||| | || || Sbjct 11955 TTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTG 12014 Query 34895 TGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTG 34954 |||||| | | || | || ||||||||| || | ||| ||||||||||| ||| Sbjct 12015 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGTG 12074 Query 34955 AGGGTCTTTACAAAGATCTGCATG 34978 |||||||| || ||||| |||||| Sbjct 12075 AGGGTCTTCACGAAGATTTGCATG 12098 Score = 96.9 bits (106), Expect = 2e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || |||||||| |||| |||||||| | || | ||||||||||| | || || Sbjct 11351 CCAGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 11410 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 |||||| | | || | || ||||||||| || | ||| ||||||||||| |||||| Sbjct 11411 TTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGTGAGG 11470 Query 34958 GTCTTTACAAAGATCTGCATG 34978 ||||| || |||||||||||| Sbjct 11471 GTCTTCACGAAGATCTGCATG 11491 >seq11608 Length=23747 Score = 98.7 bits (108), Expect = 6e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||| ||||||||||||| || |||||||| | || | || |||||||| Sbjct 13497 TCCAATTGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCC 13438 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || ||||||||| || | ||| |||||| Sbjct 13437 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTC 13378 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| || ||||||||||| Sbjct 13377 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 13346 Score = 98.7 bits (108), Expect = 6e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||| ||||||||||||| || ||||| || | || | || |||||||| Sbjct 14103 TCCAATTGCTTACCGGCGAAGATCAATCTCTGCTGATCAGGGGGGATTCCTTCCTTGTCC 14044 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || ||||||||| |||| ||| |||||| Sbjct 14043 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTC 13984 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| || ||||||||||| Sbjct 13983 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 13952 Score = 98.7 bits (108), Expect = 6e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||| ||||||||||||| || |||||||| | || | || |||||||| Sbjct 14406 TCCAATTGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCC 14347 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || ||||||||| || | ||| |||||| Sbjct 14346 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTC 14287 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| || ||||||||||| Sbjct 14286 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 14255 Score = 95.1 bits (104), Expect = 8e-15 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||| ||||||||||||| || |||||||| | || | || |||||||| Sbjct 13800 TCCAATTGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCC 13741 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || ||| ||||| || | ||| |||||| Sbjct 13740 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCTTCGACCTCTAGGGTGATGGTC 13681 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| || ||||||||||| Sbjct 13680 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 13649 Score = 95.1 bits (104), Expect = 8e-15 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 34828 CAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTT 34887 || |||||| ||||||||||||| || ||||| || | || | || |||||||| | Sbjct 14707 CAATTGCTTACCGGCGAAGATCAATCTCTGCTGATCAGGGGGGATTCCTTCCTTGTCCTG 14648 Query 34888 TATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTT 34947 || || |||||| | || | || ||||||||| |||| ||| |||||||| Sbjct 14647 GATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTT 14588 Query 34948 TCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||||||||| || ||||||||||| Sbjct 14587 GCCGGTGAGGGTCTTGACGAAGATCTGCAT 14558 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 ||||||||||||| || |||||||| | || | || |||||||| | || || Sbjct 13144 CCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATCTTGGCC 13085 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 |||||| | | || | || ||||||||| || | ||| |||||||| || |||||| Sbjct 13084 TTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTACCGGTGAGG 13025 Query 34958 GTCTTTACAAAGATCTGCATG 34978 ||||| || ||||| |||||| Sbjct 13024 GTCTTGACGAAGATTTGCATG 13004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325638189256202