Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq3082 165 2e-36 seq600 132 1e-26 seq9285 120 8e-23 >seq3082 Length=6667 Score = 165 bits (182), Expect = 2e-36 Identities = 248/343 (72%), Gaps = 11/343 (3%) Strand=Plus/Plus Query 35603 CGCTGGCTGTTTTACGCGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGT 35662 |||||| ||||||||||||||||| ||| ||||| || || | |||| | || | | Sbjct 6180 CGCTGGATGTTTTACGCGTATGACCGTCACCGGATGAGCATT-TCGCGCCCCTACTTT-T 6237 Query 35663 GAACGCACTATGGCGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTG 35722 ||||| ||||| ||| ||||||||||| ||||| | |||||| |||||||| |||| Sbjct 6238 GAACGAGCTATGCTGACACTGGGGCGTCTAATGAGACGCCTGTCAACCTTTGACTCGGTG 6297 Query 35723 ATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTA 35782 || ||||||| ||||| |||||||||||||| || ||| | || | || | Sbjct 6298 TTAAGGATGACAGATGGTTGGCCGCTGTATGACTCTTTTCTGCATACAAGATTCCAAAAA 6357 Query 35783 ATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTAAATCTGAGGCAGCACCTG 35842 ||| | ||| | ||||| || |||| |||| |||| || || |||||| Sbjct 6358 ATCTTTTTTTCA-GTACACTGCGAAATGCGCGG-GTAACACGAATCAGAACCAACACCTG 6415 Query 35843 GCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAA--AG 35900 |||||||||| || |||||| |||||| |||| | || |||| | |||||||| || Sbjct 6416 GCACGGCTGGTACCGAAGTCACTGTCGCTCTCGATGTCCCCGGAGATCCATGACAATGAG 6475 Query 35901 TC-ATCGGGCATTATCTGAACATAA-AACACTATCAATAAGTT 35941 || || | ||||||||||||||| || ||||| ||| || Sbjct 6476 TCGAT---GAATTATCTGAACATAATAATGCTATCCCTAAATT 6515 >seq600 Length=2863 Score = 132 bits (146), Expect = 1e-26 Identities = 127/159 (80%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 35703 TGTCACCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCC 35762 |||| |||||||||||||||||||| | |||| |||||||||| ||| ||| | Sbjct 2546 TGTCGCCCTTTGACGTGGTGATATGAACGACGAATGGCTGGCCAGTGTTC--ATCGTTAC 2489 Query 35763 T-GAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAAC 35821 | ||||||||||| || |||||||| ||| | || ||||||| ||||||||| ||||||| Sbjct 2488 TAGAAGGGAAAGCCGCGCGTAATCACCAAACCATCTACGCAGGGAATTGAGCAGCATAAC 2429 Query 35822 CTAAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAG 35860 || | || ||||||||| ||| |||| ||||| || || Sbjct 2428 CTGATTCGGAGGCAGCA-CTGTCACGAATGGGATGGTAG 2391 >seq9285 Length=40977 Score = 120 bits (132), Expect = 8e-23 Identities = 123/157 (78%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 35576 GGCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGTCTCCGG 35635 ||||||||||| | ||||||| |||||||||||||||| | |||| | ||| ||| Sbjct 162 GGCTATGTCGGTT-TGAATCGCGTCAGCGCTGGCTGTTTTCCAAACATGAGATTCTTCGG 104 Query 35636 AAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCGACGCTGGGGCGTCTTATG 35695 |||| || ||| ||| |||| ||||| |||| |||||||| |||| ||||||||| Sbjct 103 AAGA-AACTGCTGCTCAC-CATTCCGTGAATGCACCATGGCGACACTGGATCGTCTTATG 46 Query 35696 AGCCTGCTGTCACCCTTTGACGTGGTGATATGGATGA 35732 | |||||||| | |||||||||| ||| ||| |||| Sbjct 45 ACCCTGCTGTGAGACTTTGACGTGTTGAAATGAATGA 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127083234225120