Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq11608 105 6e-18 seq9206 104 2e-17 >seq11608 Length=23747 Score = 105 bits (116), Expect = 6e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || | | ||||||||| || ||||| ||||||||||| |||| Sbjct 13491 TGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATC 13432 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||| | ||||||| || ||| || |||| ||||| ||| |||||| Sbjct 13431 TTGGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCG 13372 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| |||||||| Sbjct 13371 GTGAGGGTCTTGACGAAGATCTGCAT 13346 Score = 105 bits (116), Expect = 6e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || | | ||||||||| || ||||| ||||||||||| |||| Sbjct 14400 TGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATC 14341 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||| | ||||||| || ||| || |||| ||||| ||| |||||| Sbjct 14340 TTGGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCG 14281 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| |||||||| Sbjct 14280 GTGAGGGTCTTGACGAAGATCTGCAT 14255 Score = 102 bits (112), Expect = 8e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || | | |||||| || || ||||| ||||||||||| |||| Sbjct 14703 TGCTTACCGGCGAAGATCAATCTCTGCTGATCAGGGGGGATTCCTTCCTTGTCCTGGATC 14644 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||||| ||||||| || ||| || || | ||||| ||| |||||| Sbjct 14643 TTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCG 14584 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| |||||||| Sbjct 14583 GTGAGGGTCTTGACGAAGATCTGCAT 14558 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || | | ||||||||| || ||||| ||||||||||| |||| Sbjct 13794 TGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATC 13735 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||||| ||||||| || || || || | ||||| ||| ||||| Sbjct 13734 TTGGCCTTGACGTTCTCAATGGTGTCGGAGGCTTCGACCTCTAGGGTGATGGTCTTGCCA 13675 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| |||||||| Sbjct 13674 GTGAGGGTCTTGACGAAGATCTGCAT 13649 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || | | |||||| || || ||||| ||||||||||| |||| Sbjct 14097 TGCTTACCGGCGAAGATCAATCTCTGCTGATCAGGGGGGATTCCTTCCTTGTCCTGGATC 14038 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||||| ||||||| || ||| || || | ||||| ||| ||||| Sbjct 14037 TTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCA 13978 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| |||||||| Sbjct 13977 GTGAGGGTCTTGACGAAGATCTGCAT 13952 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 133538 CTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGT 133597 ||||||||| || ||||| ||||||||||| |||||| ||||| | || | || Sbjct 13127 CTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATGGT 13068 Query 133598 GTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTG 133657 ||||| || ||| || |||| ||||| ||| || ||||| || || || ||||| || || Sbjct 13067 GTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTACCGGTGAGGGTCTTGACGAAGATTTG 13008 Query 133658 CATGG 133662 ||||| Sbjct 13007 CATGG 13003 >seq9206 Length=19012 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | || || | |||||||||||||||||| || |||||||| |||||| | Sbjct 12668 CCAGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 12727 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | || | ||||||| || ||| || |||| ||||| ||| || ||||| || Sbjct 12728 TTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCGGTGAGC 12787 Query 133641 GTTTTTACGAAAATCTGCAT 133660 ||||| |||||||| ||||| Sbjct 12788 GTTTTGACGAAAATTTGCAT 12807 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | || || | |||||||||||||||||| || |||||||| |||||| | Sbjct 11351 CCAGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 11410 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | || | ||||||| || ||| || |||| ||||| ||| || || || || Sbjct 11411 TTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGTGAGG 11470 Query 133641 GTTTTTACGAAAATCTGCATGGCT 133664 || || ||||| ||||||||| || Sbjct 11471 GTCTTCACGAAGATCTGCATGCCT 11494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483337663707920