Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq6555 107 5e-18 seq6944 84.2 5e-11 >seq6555 Length=16063 Score = 107 bits (118), Expect = 5e-18 Identities = 101/128 (79%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 110667 AAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATAT 110726 || ||| |||| | |||||||||||| ||| | |||| |||||| | ||||| |||||| Sbjct 14195 AATGGTACTTCGAATGGACTTGTTCCCATGCTTCGAGTATTCAACAATACTGCGAAATAT 14254 Query 110727 GTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCAT 110783 ||| ||||||| || ||||||| || |||| || |||||||||||||| |||||| Sbjct 14255 GTGGATCAAGGAGGAAATAAGAGACCAGGAGCATTCGCAATCTATCTCGAACCATGGCAT 14314 Query 110784 TCAGATAT 110791 | ||||| Sbjct 14315 GCTGATAT 14322 >seq6944 Length=26985 Score = 84.2 bits (92), Expect = 5e-11 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 167250 CCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACG 167308 || || |||||||||||| |||| ||||| ||||| || |||| ||||||||||| || Sbjct 24850 CCGGCGTTATCGAATTCAC-CGCAATAATTAGGTGCAGAGAATAGAGTAACTAATTGCCG 24792 Query 167309 ATTGAAAAATAATTCATAACCATCTTCAACAAC 167341 || || ||||||||||||||||||||||| Sbjct 24791 CTTAGCGAAGAATTCATAACCATCTTCAACAAC 24759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186603595315438