Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq11455 145 1e-28 seq9415 140 5e-27 seq9275 140 5e-27 seq8285 140 5e-27 seq11838 136 6e-26 seq5947 131 2e-24 seq11757 109 8e-18 >seq11455 Length=31463 Score = 145 bits (160), Expect = 1e-28 Identities = 181/247 (73%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||| || |||||| || ||||||||||| |||||| || ||| Sbjct 16 TCGTACTCGGTCTACATCTACCGTGTCCTCAAGCAGGTTCACCCCGACAC---TGGAGTT 72 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 |||||||| | |||||||||||||||||||||| || |||||| | |||| | ||| Sbjct 73 TCCTCCAA---GGCCATGTCGATCATGAACTCGTTCGTTAACGACGTCTTCGAGAGAATC 129 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | |||||| || || || | || ||||||||| || ||| | ||||| Sbjct 130 GCCGGTGAGGCCTCCCGTCTCGCTCACTACAACAAGCGATCGACCATCTCTTCTCGCGAA 189 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| ||||| ||||| ||| | | || || || |||| |||||||||||| ||| Sbjct 190 ATCCAGACGGCCGTCCGCCTCATCCTCCCTGGAGAGCTTGCCAAGCACGCCGTCTCTGAG 249 Query 725136 GGCACCA 725142 ||||||| Sbjct 250 GGCACCA 256 >seq9415 Length=29279 Score = 140 bits (154), Expect = 5e-27 Identities = 180/247 (73%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 || |||||| || |||||| || ||||||||||| |||||| |||| | Sbjct 10372 TCCTACTCGGTCTACATCTACCGTGTCCTCAAGCAGGTTCACCCCGACACCGGAGTT--- 10316 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 |||||||| | |||||||||||||||||||||| || |||||| | |||| | ||| Sbjct 10315 TCCTCCAA---GGCCATGTCGATCATGAACTCGTTCGTGAACGACGTCTTCGAGAGAATC 10259 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | |||||| || || || | || ||||||||| || ||| | ||||| Sbjct 10258 GCCGGTGAGGCCTCCCGTCTCGCTCACTACAACAAGCGATCGACCATCTCTTCTCGCGAA 10199 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| || || ||||| ||| | | ||| || || |||| |||||||||||| ||| Sbjct 10198 ATCCAGACGGCGGTCCGCCTCATCCTCCCCGGAGAGCTTGCCAAGCACGCCGTCTCTGAG 10139 Query 725136 GGCACCA 725142 ||||||| Sbjct 10138 GGCACCA 10132 >seq9275 Length=23809 Score = 140 bits (154), Expect = 5e-27 Identities = 180/247 (73%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 || |||||| || |||||| || ||||||||||| |||||| |||| | Sbjct 6247 TCCTACTCGGTCTACATCTACCGTGTCCTCAAGCAGGTTCACCCCGACACCGGAGTT--- 6191 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 |||||||| | |||||||||||||||||||||| || |||||| | |||| | ||| Sbjct 6190 TCCTCCAA---GGCCATGTCGATCATGAACTCGTTCGTGAACGACGTCTTCGAGAGAATC 6134 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | ||||| ||| || || | || ||||||||| || ||| | ||||| Sbjct 6133 GCCGGTGAGGCTTCTCGTCTCGCTCACTACAACAAGCGATCGACCATCTCTTCTCGCGAA 6074 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| || || ||||| ||| | | ||| || || |||| |||||||||||| ||| Sbjct 6073 ATCCAGACGGCGGTCCGCCTCATCCTCCCCGGAGAGCTTGCCAAGCACGCCGTCTCTGAG 6014 Query 725136 GGCACCA 725142 ||||||| Sbjct 6013 GGCACCA 6007 >seq8285 Length=4754 Score = 140 bits (154), Expect = 5e-27 Identities = 180/247 (73%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 || |||||| || |||||| || ||||||||||| |||||| |||| | Sbjct 3579 TCCTACTCGGTCTACATCTACCGTGTCCTCAAGCAGGTTCACCCCGACACCGGAGTT--- 3523 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 |||||||| | |||||||||||||||||||||| || |||||| | |||| | ||| Sbjct 3522 TCCTCCAA---GGCCATGTCGATCATGAACTCGTTCGTGAACGACGTCTTCGAGAGAATC 3466 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | |||||| || || || | || ||||||||| || ||| | ||||| Sbjct 3465 GCCGGTGAGGCCTCCCGTCTCGCTCACTACAACAAGCGATCGACCATCTCTTCTCGCGAA 3406 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| || || ||||| ||| | | ||| || || |||| |||||||||||| ||| Sbjct 3405 ATCCAGACGGCGGTCCGCCTCATCCTCCCCGGAGAGCTTGCCAAGCACGCCGTCTCTGAG 3346 Query 725136 GGCACCA 725142 ||||||| Sbjct 3345 GGCACCA 3339 Score = 93.3 bits (102), Expect = 6e-13 Identities = 145/205 (71%), Gaps = 7/205 (3%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 || |||||| || |||||| || ||||||||||| |||||| |||| | Sbjct 283 TCCTACTCGGTCTACATCTACCGTGTCCTCAAGCAGGTTCACCCCGACACCGGAGTT--- 227 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 |||||||| | |||||||||||||||||||||| || |||||| | |||| | ||| Sbjct 226 TCCTCCAA---GGCCATGTCGATCATGAACTCGTTCGTGAACGACGTCTTCGAGAGAATC 170 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | |||||| || || || | || ||||||||| || ||| | ||||| Sbjct 169 GCCGGTGAGGCCTCCCGTCTCGCTCACTACAACAAGCGATCGACCATCTCTTCTCGCGAA 110 Query 725076 ATCCAGACCGCCGTGC-GCCTGATC 725099 |||||||| || || | |||| ||| Sbjct 109 ATCCAGACGGCGGTACGGCCTCATC 85 >seq11838 Length=51442 Score = 136 bits (150), Expect = 6e-26 Identities = 179/247 (72%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 || |||||| || |||||| || ||||||||||| |||||| |||| | Sbjct 50359 TCCTACTCGGTCTACATCTACCGTGTCCTCAAGCAGGTTCACCCCGACACCGGAGTT--- 50303 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 |||||||| | ||||||||||||||||||| || || |||||| | |||| | ||| Sbjct 50302 TCCTCCAA---GGCCATGTCGATCATGAACTCTTTCGTGAACGACGTCTTCGAGAGAATC 50246 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | ||||| ||| || || | || ||||||||| || ||| | ||||| Sbjct 50245 GCCGGTGAGGCTTCTCGTCTCGCTCACTACAACAAGCGATCGACCATCTCTTCTCGCGAA 50186 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| || || ||||| ||| | | ||| || || |||| |||||||||||| ||| Sbjct 50185 ATCCAGACGGCGGTCCGCCTCATCCTCCCCGGAGAGCTTGCCAAGCACGCCGTCTCTGAG 50126 Query 725136 GGCACCA 725142 ||||||| Sbjct 50125 GGCACCA 50119 >seq5947 Length=16730 Score = 131 bits (144), Expect = 2e-24 Identities = 178/247 (72%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 || |||||| || |||||| || ||||||||||| |||||| |||| | Sbjct 5832 TCCTACTCGGTCTACATCTACCGTGTCCTCAAGCAGGTTCACCCCGACACCGGAGTT--- 5776 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 |||||||| | | ||||||||||||||||| || || |||||| | |||| | ||| Sbjct 5775 TCCTCCAA---GGCTATGTCGATCATGAACTCTTTCGTGAACGACGTCTTCGAGAGAATC 5719 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | |||||| || || || | || ||||||||| || ||| | ||||| Sbjct 5718 GCCGGTGAGGCCTCCCGTCTCGCTCACTACAACAAGCGATCGACCATCTCTTCTCGCGAA 5659 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| || || ||||| ||| | | ||| || || |||| |||||||||||| ||| Sbjct 5658 ATCCAGACGGCGGTCCGCCTCATCCTCCCCGGAGAGCTTGCCAAGCACGCCGTCTCTGAG 5599 Query 725136 GGCACCA 725142 ||||||| Sbjct 5598 GGCACCA 5592 >seq11757 Length=39336 Score = 109 bits (120), Expect = 8e-18 Identities = 143/197 (73%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || ||||||||||| |||||| |||| | |||||||| | || Sbjct 19018 ATCTACCGTGTCCTCAAGCAGGTTCACCCCGACACCGGAGTT---TCCTCCAA---GGCC 19071 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||||||||| || || ||| | |||| | |||| | |||||| | Sbjct 19072 ATGTCGATCATGAACTCGTTCGTGAATGACGTCTTCGAGAGAATCGCCGGCGAGGCTTCT 19131 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||||| |||||| | | ||||| |||||||| ||||| Sbjct 19132 CGTCTCGCTCACTACAACAAGCGATCGACGATCTCCTCTCGCGAAATCCAGACGGCCGTC 19191 Query 725091 CGCCTGATCATGCGCGG 725107 ||||| ||| | | ||| Sbjct 19192 CGCCTCATCCTTCCCGG 19208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176484215612796