Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5739 111 2e-19 seq6555 100 4e-16 seq11767 86.0 9e-12 >seq5739 Length=20024 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 69689 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTAT 69748 ||||||| ||||||| ||||||||| || ||||| || || | |||| |||||||||| Sbjct 443 ACTCCATGATATCAGCATGCCATGGCTCAAGATAAATAGCGAAAGCTCCGGGTCGTTTAT 502 Query 69749 TTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATAC 69808 |||| |||||||| | |||| |||| ||||| || | ||| |||||||||| | | | Sbjct 503 TTCCACCCTGATCAACGTATTTGGCCGTGTTGTTGAACACTTTCAGCATCGGTACGAGTC 562 Query 69809 CATTAGATTTACCATTTGT 69827 |||| || | ||||| || Sbjct 563 CATTCGAGGTTCCATTCGT 581 >seq6555 Length=16063 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 69688 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTA 69747 |||| ||| ||||||| |||||||||||| ||||| || || | |||| |||| ||| Sbjct 14331 AACTGCATGATATCAGCATGCCATGGTTCGAGATAGATTGCGAATGCTCCTGGTCTCTTA 14272 Query 69748 TTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATA 69807 |||||||| ||||| | ||| | ||||| || || | |||| ||||| |||| || Sbjct 14271 TTTCCTCCTTGATCCACATATTTCGCAGTATTGTTGAATACTCGAAGCATGGGAACAAGT 14212 Query 69808 CCATTAGATTTACCATTTGT 69827 ||||| || ||||||| || Sbjct 14211 CCATTCGAAGTACCATTAGT 14192 Score = 91.5 bits (100), Expect = 2e-13 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 69088 AATGCATCTGCCAATCCCTGAAC-CCCAATACCGATAGGTCTATGTCTCTTATTTGAACT 69146 |||||||| ||||||||||| || |||||| || || |||| |||||||||||| || Sbjct 15136 AATGCATCAGCCAATCCCTGTACTCCCAAT-CCAATCGGTCGATGTCTCTTATTACTCCT 15078 Query 69147 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCG 69200 ||| ||||| ||||| ||||| ||||| | ||| || || || || | ||| || Sbjct 15077 TTCTGCTTCGGGAATCGGATAGTAATTCACATCGATGATCTTGTTCAAATTGCG 15024 >seq11767 Length=21069 Score = 86.0 bits (94), Expect = 9e-12 Identities = 86/109 (79%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 69093 ATCTGCCAATCCCTGAAC-CCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAG 69151 ||| |||||||||||||| |||||| ||||| |||| |||||||||||| || || | Sbjct 20298 ATCAGCCAATCCCTGAACTCCCAAT-CCGATCGGTCGATGTCTCTTATTGCTTCTCTCTG 20356 Query 69152 CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCG 69200 |||| || || ||||| || || | ||| || || ||||| ||||| || Sbjct 20357 CTTCAGGGATTGGATAGTAGTTTACATCGATGATCTTATTTAGATTGCG 20405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686790668859120