Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_027381.1 Length=68365 Score E Sequences producing significant alignments: (Bits) Value seq7862 702 0.0 >seq7862 Length=1280 Score = 702 bits (778), Expect = 0.0 Identities = 653/827 (79%), Gaps = 4/827 (0%) Strand=Plus/Plus Query 55922 AAAGGTTAATCCCGCCACCGCTCAACAAATTCACGTCAGCGCGTATTTCCAGACAATCGT 55981 |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2 AAAGATTAATCCCGCCACCGCTCAACAAATCCACGTCAGCGCGTATTTCCAGACAATCGT 61 Query 55982 GCACGGCGTTCAGGCGGTGTTTCCACTGAACGAAGCGGCC-TGTGTATTCTCCGGTTCGG 56040 ||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 62 GCACGATGTTCAGTCGGTGTTTCCACTGAACGAAGCGGCCCTGTGTATTCTCCGGTTCGG 121 Query 56041 AACGCATCCCCGAACAAACGAAAAACAGCAGCAGAAGTGTCTGTATCCGGAGCCTCCTTT 56100 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 122 AACGCATCCCCGTACAAACGAAAAACAGCAGCAGAAGTGTCTGTATCCGGAGCCTCCTTT 181 Query 56101 CTGACCTCAAATAACGGGCGATGCGAGCGCAGATTCTGCTCATAGGCTGCCACCTGGAAG 56160 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 CTGACCTCAAATAACGGGCGATGCGAGCGCAGATTCTGCTCATAGGCTGCCACCTGGAAG 241 Query 56161 TCTTCATTGGGTGACAGGGCAATATTTACAGCATTGGGACATAGAAAAAGACTGGCATGA 56220 |||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| Sbjct 242 TCTTCATTGGGTGACAGGGCAATATTTACAGCATTGGGACTCAGAAAAAGGCTAGCATGG 301 Query 56221 CTATCAGGATAAGCTACACCAAA---AATTGAATACCCAGTACCATCATAAGGTTCTACA 56277 || |||||| | || || || | | ||| || || || || |||| || || Sbjct 302 CTGTCAGGAAACGCCACGCCGGAGTCCACCAGATAGCCTGTGCCGTCGTAAGCCTCCACG 361 Query 56278 GAGACAATAGCTTTAGTACGCTTTGTTCTTGTACCACGAGTATAAGTCTTTGTTGAATCC 56337 || || | |||||| | || ||||| |||| ||||||| ||| || | ||| Sbjct 362 GAAACCACAGCTTTGCTGCGTTTTGTCGCCACGCCACACGTATAAGACTTCGTGGCATCA 421 Query 56338 CATTGACTTGCATTACTTGTTCCATAAGTAGTAGGTGTCCAATAAGTTGGGTTTACTGGA 56397 ||| ||||| |||||||| | ||||| ||||| |||| ||| || || || Sbjct 422 TATTTCGTTGCAGCCGCCGTTCCATATGCTGTAGGCGTCCAGTAAGATGGATTCACCGGG 481 Query 56398 GAATACCCGGAAAAATTAGCTGTTCTTGCAGCAAAGTATTTTCCTTCAAATAAAACAACA 56457 ||| || |||||||| | || | ||| ||||||||| || ||||| |||| ||| Sbjct 482 GAACGGCCAGAAAAATTTGTTGCACGTGCTGCAAAGTATGCCCCCTCAAAAGAAACCACA 541 Query 56458 TCTGCTGTGGCATACCAAAAATCCATATCAAGCAGATATAGTTTACCTTTATATAAAGCT 56517 |||||||| | |||| ||||||||||| |||||||| ||||| || |||| | ||| Sbjct 542 TCTGCTGTCTGACACCAGAAATCCATATCGAGCAGATACAGTTTTCCGTTATGAAGAGCC 601 Query 56518 AATCCTTCTGGTTCTTGTAAACATGGATAACCTAATTCTGCATTACCAAGCATTTTCTCA 56577 | ||||| | ||| || ||| ||||| || | |||||||| || |||||||||| Sbjct 602 AGCCCTTCGGCTTCCTGCAAAACGGGATACCCCAGCTCTGCATTCCCCAGCATTTTCTGG 661 Query 56578 CGTCCATACTTAGCACGCACACCATCTACATTAAACCATCTAATAATCTCACCTGTGAAT 56637 || |||||| | ||||| || ||||| ||||| ||| ||| | || || || || | Sbjct 662 CGGCCATACCTGGCACGAACGCCATCCACATTGAACTGTCTGACAACTTCGCCCGTTGAC 721 Query 56638 AAATTATAAATAACAATACGGTGGGTTAAGAAAACACCATTGTATCCATAATATACATAT 56697 | ||||| | |||||| ||||| || | || || || | || || ||||| ||| | Sbjct 722 AGGTTATATACAACAATGCGGTGAGTCAGAAATACGCCTGTATAACCGTAATAAACAAAC 781 Query 56698 AGATATTGGTCATCACTTGCCATCCCTTGGAAAGATTGAGCCACCAT 56744 |||| || |||| || |||||||| || || | || | |||||| Sbjct 782 CGATAATGACCATCGCTGGCCATCCCCTGAAATGCCTGCGACACCAT 828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 218606538864788