Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq11767 96.9 4e-15 seq9143 93.3 5e-14 >seq11767 Length=21069 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 104945 GACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTC 105004 |||||||||||| |||||| || ||| ||||| |||| ||||||| |||||||||| Sbjct 20659 GACGCCTGTAACGCAAAGAGCAACCAACAGAATCTGGGAACGATCAAGTGTTCCAATCTG 20600 Query 105005 TGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCA 105064 ||||| || ||| |||| | | || | ||||| ||| || || || ||||| || Sbjct 20599 TGTACTGAGATCGTGGAGTATTCATCCCCTGATGAAGTGGCCGTTTGCAATCTCGCGTCC 20540 Query 105065 ATCGCTCTCCCCA 105077 |||||||| |||| Sbjct 20539 ATCGCTCTTCCCA 20527 >seq9143 Length=31746 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| |||||||| || |||| || ||||| || ||||| ||||||||||| || || Sbjct 9583 TCCTTCGCTGAGCGTCTGATCGCTTTCGCGTGCGTCGAGGGCATCTTCTTCTCGGGCTCG 9524 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 ||| || || | ||||| |||||| |||| |||||||| || ||| ||||| Sbjct 9523 TTCGCGGCCATCTTCTGGCTGAAGAAGAGAGGACTCATGCCCGGACTCACTCATTCCAAT 9464 Query 94915 GAGCTTATCTCTCG 94928 ||||| ||||| || Sbjct 9463 GAGCTCATCTCGCG 9450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583160493723920