Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq9206 111 2e-19 seq11608 109 6e-19 seq6148 82.4 9e-11 seq4923 82.4 9e-11 seq409 82.4 9e-11 >seq9206 Length=19012 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| ||||| ||||| ||||| || || || ||||| ||| | Sbjct 12807 ATGCAAATTTTCGTCAAAACGCTCACCGGAAAGACCATCACCCTCGAGGTCGAGGCCTCC 12748 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || ||||||||||||||||| ||||| |||||| Sbjct 12747 GACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAG 12688 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||| | || || || |||||| || Sbjct 12687 CAGAGACTTATCTTCGCTGGTTAG 12664 Score = 102 bits (112), Expect = 9e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || || || ||||| ||| | Sbjct 10780 ATGCAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAGGCCTCC 10721 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || ||||||||||||||||| || || |||||| Sbjct 10720 GACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAG 10661 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCA 27551 ||| | || || || || |||||||| Sbjct 10660 CAGAGACTCATCTTCGCCGGTAAGCA 10635 Score = 102 bits (112), Expect = 9e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || || || ||||| ||| | Sbjct 11083 ATGCAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAGGCCTCC 11024 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || |||||||||||||||||||| || || ||| Sbjct 11023 GACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAG 10964 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCA 27551 ||| | || || || || |||||||| Sbjct 10963 CAGAGACTCATCTTCGCCGGTAAGCA 10938 Score = 102 bits (112), Expect = 9e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || || || ||||| ||| | Sbjct 11490 ATGCAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAGGCCTCC 11431 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || ||||||||||||||||| ||||| |||||| Sbjct 11430 GACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAG 11371 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||| | || || || |||||| || Sbjct 11370 CAGAGACTTATCTTCGCTGGTTAG 11347 Score = 102 bits (112), Expect = 9e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || || || ||||| ||| | Sbjct 12400 ATGCAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAGGCCTCC 12341 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || |||||||||||||||||||| || || ||| Sbjct 12340 GACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAG 12281 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCA 27551 ||| | || || || || |||||||| Sbjct 12280 CAGAGACTCATCTTCGCCGGTAAGCA 12255 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || || || ||||| || || || ||||| ||| | Sbjct 12097 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAGGCCTCC 12038 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || ||||||||||||||||| || || |||||| Sbjct 12037 GACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAG 11978 Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548 ||| | || || || || ||||| Sbjct 11977 CAGAGACTCATCTTCGCCGGTAA 11955 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || || || ||||| ||| | Sbjct 10477 ATGCAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAGGCCTCC 10418 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || ||||||||||||||||| || || |||||| Sbjct 10417 GACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAG 10358 Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548 ||| | || || || || ||||| Sbjct 10357 CAGAGACTCATCTTCGCCGGTAA 10335 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || || || ||||| ||| | Sbjct 11793 ATGCAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAGGCCTCC 11734 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || || || || ||||||||||||||||| || || |||||| Sbjct 11733 GACACCATCGAAAACGTCAAAGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAG 11674 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCA 27551 ||| | || || || || |||||||| Sbjct 11673 CAGAGACTCATCTTCGCCGGTAAGCA 11648 >seq11608 Length=23747 Score = 109 bits (120), Expect = 6e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || ||||||||||| || || |||||||| ||| | Sbjct 14557 AATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGGCCTC 14616 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| || | ||||| || || ||||||||||| ||||| || || || || Sbjct 14617 CGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCTGATCA 14676 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 |||| | | || || || ||||||||| Sbjct 14677 GCAGAGATTGATCTTCGCCGGTAAGCAA 14704 Score = 105 bits (116), Expect = 8e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || ||||||||||| || || || ||||| ||| | Sbjct 13345 AATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGGCCTC 13404 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || | ||||| || || ||||||||||| ||||| || || ||||| Sbjct 13405 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCTGACCA 13464 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 |||| | | || || || ||||||||| Sbjct 13465 GCAGAGATTGATCTTCGCCGGTAAGCAA 13492 Score = 105 bits (116), Expect = 8e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || || |||||||| || || |||||||| ||| | Sbjct 13951 AATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGGCCTC 14010 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| || | ||||| || || ||||||||||| ||||| || || || || Sbjct 14011 CGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCTGATCA 14070 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 |||| | | || || || ||||||||| Sbjct 14071 GCAGAGATTGATCTTCGCCGGTAAGCAA 14098 Score = 105 bits (116), Expect = 8e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || ||||||||||| || || || ||||| ||| | Sbjct 14254 AATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGGCCTC 14313 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || | ||||| || || ||||||||||| ||||| || || ||||| Sbjct 14314 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCTGACCA 14373 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 |||| | | || || || ||||||||| Sbjct 14374 GCAGAGATTGATCTTCGCCGGTAAGCAA 14401 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || || |||||||| || || || ||||| || | Sbjct 13648 AATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTAGAGGTCGAAGCCTC 13707 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| || | ||||| || || ||||||||||| ||||| || || ||||| Sbjct 13708 CGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCTGACCA 13767 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 |||| | | || || || ||||||||| Sbjct 13768 GCAGAGATTGATCTTCGCCGGTAAGCAA 13795 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||| ||||| || || || ||||| ||| | Sbjct 13005 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACCATCACCCTCGAGGTCGAGGCCTCC 13064 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || ||||||||||| ||||| || || |||||| Sbjct 13065 GACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCTGACCAG 13124 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||| | | || || || ||| || Sbjct 13125 CAGAGATTGATCTTCGCCGGTTAG 13148 >seq6148 Length=26920 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60974 CCGGTTCCATAGTATAACGGTTAGTACACAGGACTCTGAATCCTGTAATGGGAGTTCGAT 61033 ||||| || | || || ||||||| || ||||||||||||||||| | |||||||| | Sbjct 9962 CCGGTCCCGTGGTGTAGCGGTTAGCACTCAGGACTCTGAATCCTGCGACGGGAGTTCAAA 10021 Query 61034 TCTCCCTGGAACCTTCCTCT 61053 |||||| || |||||||||| Sbjct 10022 TCTCCCCGGGACCTTCCTCT 10041 >seq4923 Length=13381 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 60969 CATTTCCGGTTCCATAGTATAACGGTTAGTACACAGGACTCTGAATCCTGTAATGGGAGT 61028 || || |||| || | || || ||||||| || ||||||||||||||||| | |||||| Sbjct 11021 CACTTGCGGTCCCGTGGTGTAGCGGTTAGCACTCAGGACTCTGAATCCTGCGACGGGAGT 10962 Query 61029 TCGATTCTCCCTGGAACCTTCCTCT 61053 || | |||||| || |||||||||| Sbjct 10961 TCAAATCTCCCCGGGACCTTCCTCT 10937 >seq409 Length=21185 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60974 CCGGTTCCATAGTATAACGGTTAGTACACAGGACTCTGAATCCTGTAATGGGAGTTCGAT 61033 ||||| || | || || ||||||| || ||||||||||||||||| | |||||||| | Sbjct 20767 CCGGTCCCGTGGTGTAGCGGTTAGCACTCAGGACTCTGAATCCTGCGACGGGAGTTCAAA 20826 Query 61034 TCTCCCTGGAACCTTCCTCT 61053 |||||| || |||||||||| Sbjct 20827 TCTCCCCGGGACCTTCCTCT 20846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570212320868960