Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq9206 104 6e-17 seq11608 95.1 3e-14 >seq9206 Length=19012 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 |||||||||||||||| || |||||||| || || || |||||||| |||||||| | Sbjct 12668 CCAGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 12727 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || |||||||||||| |||| || || || | ||||| ||||| || || | Sbjct 12728 TTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCGGTGAGC 12787 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | ||| | |||||| Sbjct 12788 GTTTTGACGAAAATTTGCAT 12807 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 |||||||||||||||| || |||||||| || || || |||||||| |||||||| | Sbjct 11351 CCAGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 11410 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || |||||||||||| |||| || || || | ||||| ||||| || || | Sbjct 11411 TTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGTGAGG 11470 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | ||||| Sbjct 11471 GTCTTCACGAAGATCTGCAT 11490 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| || |||||||| |||| || ||||| || || || || |||||||| |||||| Sbjct 10635 TGCTTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATC 10694 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| || |||||||||||| |||| || || || | ||||| ||||| || Sbjct 10695 TTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 10754 Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713 || | || || | ||| | ||||| Sbjct 10755 GTGAGGGTCTTCACGAAGATCTGCAT 10780 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| || |||||||| |||| || || || || ||||| || |||||||| |||||| Sbjct 10938 TGCTTACCGGCGAAGATGAGTCTCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGGATC 10997 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| || |||||||||||| |||| || || || | ||||| ||||| || Sbjct 10998 TTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 11057 Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713 || | || || | ||| | ||||| Sbjct 11058 GTGAGGGTCTTCACGAAGATCTGCAT 11083 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| |||| || ||||| || || || || |||||||| |||||||| Sbjct 11955 TTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTG 12014 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| || |||||||||||| |||| || || || | ||||| ||||| || || Sbjct 12015 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGTG 12074 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | || || | ||| | |||||| Sbjct 12075 AGGGTCTTCACGAAGATTTGCAT 12097 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| || |||||||| |||| || || || || ||||| || |||||||| |||||| Sbjct 12255 TGCTTACCGGCGAAGATGAGTCTCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGGATC 12314 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| || |||||||||||| |||| || || || | ||||| ||||| || Sbjct 12315 TTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 12374 Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713 || | || || | ||| | ||||| Sbjct 12375 GTGAGGGTCTTCACGAAGATCTGCAT 12400 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| || |||||||| |||| || ||||| || || || || |||||||| |||||| Sbjct 11648 TGCTTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATC 11707 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || || || |||||||||||| |||| || || || | ||||| ||||| || Sbjct 11708 TTGGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 11767 Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713 || | || || | ||| | ||||| Sbjct 11768 GTGAGGGTCTTCACGAAGATCTGCAT 11793 >seq11608 Length=23747 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| || |||||||| | || || ||||| || || || ||||||||||| |||||| Sbjct 13794 TGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATC 13735 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| || || |||||||| |||| ||| || |||| ||||| |||||||| Sbjct 13734 TTGGCCTTGACGTTCTCAATGGTGTCGGAGGCTTCGACCTCTAGGGTGATGGTCTTGCCA 13675 Query 225688 GTCAAAGTTTTTATGAACACTTGCATT 225714 || | || || | ||| | |||||| Sbjct 13674 GTGAGGGTCTTGACGAAGATCTGCATT 13648 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| || |||||||| | || || ||||| || || || ||||||||||| |||||| Sbjct 13491 TGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATC 13432 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| || ||||||||||| |||| || || || | ||||| |||||||| Sbjct 13431 TTGGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCG 13372 Query 225688 GTCAAAGTTTTTATGAACACTTGCATT 225714 || | || || | ||| | |||||| Sbjct 13371 GTGAGGGTCTTGACGAAGATCTGCATT 13345 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| || |||||||| | || || ||||| || || || ||||||||||| |||||| Sbjct 14400 TGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATC 14341 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| || ||||||||||| |||| || || || | ||||| |||||||| Sbjct 14340 TTGGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCG 14281 Query 225688 GTCAAAGTTTTTATGAACACTTGCATT 225714 || | || || | ||| | |||||| Sbjct 14280 GTGAGGGTCTTGACGAAGATCTGCATT 14254 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| | || || ||||| || || || ||||||||||| |||||||| | Sbjct 13144 CCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATCTTGGCC 13085 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || |||||||||||| |||| || || || | ||||| ||||| || || | Sbjct 13084 TTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTACCGGTGAGG 13025 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | |||||| Sbjct 13024 GTCTTGACGAAGATTTGCAT 13005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192320987308052