Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6555 107 3e-18 seq5739 102 1e-16 >seq6555 Length=16063 Score = 107 bits (118), Expect = 3e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| | ||| || | || || |||||||| || || || | ||| | | || | Sbjct 13896 GTTCCCGAATTGAAAAGAGTGGGCGATGCATGTGTGAAGTATCTCTCACTCATCATATCG 13837 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||| || || |||| |||||| ||| ||| ||||| | |||||| | ||| ||| Sbjct 13836 TATGTCTCTATCGCTGCTTCTATATCCTCCCCATGGATTCCAATCGCTACTCTCATTAAC 13777 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 || ||||||||||| || || ||||| || || |||| | |||||| | |||| | Sbjct 13776 ATGTGCTGAGGTCTCTCTACTGTCTTTCCATCCATCTTCAGTAGATATGATCTCTCCAGA 13717 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAG 78637 || || || ||||| | ||| |||||||||| ||||| | || | ||||| || Sbjct 13716 GTCTTGAATCCAAAGAAAGAGTACGAAAAGTCTCGATCGTACACTATGGCGGAATTGAG 13658 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 78096 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTA 78155 |||| ||| ||||||| |||||||||||| ||||| ||||| | |||| |||| ||| Sbjct 14331 AACTGCATGATATCAGCATGCCATGGTTCGAGATAGATTGCGAATGCTCCTGGTCTCTTA 14272 Query 78156 TTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 78215 || ||||| ||||| | |||| | || || || || | |||| | ||| |||| || Sbjct 14271 TTTCCTCCTTGATCCACATATTTCGCAGTATTGTTGAATACTCGAAGCATGGGAACAAGT 14212 Query 78216 CCGTTAGATGTTCCATTTGT 78235 || || || || ||||| || Sbjct 14211 CCATTCGAAGTACCATTAGT 14192 >seq5739 Length=20024 Score = 102 bits (112), Expect = 1e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 78097 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTAT 78156 ||||||| ||||||| ||||||||| || ||||| || || | | |||| |||||||||| Sbjct 443 ACTCCATGATATCAGCATGCCATGGCTCAAGATAAATAGCGAAAGCTCCGGGTCGTTTAT 502 Query 78157 TACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 78216 | || |||||||| | ||| |||| ||||| || | ||| ||| ||| || | | | Sbjct 503 TTCCACCCTGATCAACGTATTTGGCCGTGTTGTTGAACACTTTCAGCATCGGTACGAGTC 562 Query 78217 CGTTAGATGTTCCATTTGT 78235 | || || |||||||| || Sbjct 563 CATTCGAGGTTCCATTCGT 581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694549334333120