Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6555 107 3e-18 seq11767 93.3 6e-14 seq5739 93.3 6e-14 >seq6555 Length=16063 Score = 107 bits (118), Expect = 3e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| | ||| || | || || |||||||| ||||| || | ||| | | || | Sbjct 13896 GTTCCCGAATTGAAAAGAGTGGGCGATGCATGTGTGAAGTATCTCTCACTCATCATATCG 13837 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||| || || |||||||||||||| ||| ||||| | || || | ||| ||| Sbjct 13836 TATGTCTCTATCGCTGCTTCTATATCCTCCCCATGGATTCCAATCGCTACTCTCATTAAC 13777 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || |||||||||| ||||| ||||| || || |||| | |||||| | |||| | Sbjct 13776 ATGTGCTGAGGTCTCTCTACTGTCTTTCCATCCATCTTCAGTAGATATGATCTCTCCAGA 13717 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAG 77232 || || || ||||| | ||| |||||||||| ||||| | || | ||||| || Sbjct 13716 GTCTTGAATCCAAAGAAAGAGTACGAAAAGTCTCGATCGTACACTATGGCGGAATTGAG 13658 Score = 95.1 bits (104), Expect = 2e-14 Identities = 121/166 (73%), Gaps = 3/166 (2%) Strand=Plus/Minus Query 76238 AAATCAAATTTTCCATCTATC---ACAAACATATTAAGAGCTATAGATGCTAGATTACAA 76294 || |||||| |||||| || |||||| || |||||| ||||| || ||||| || Sbjct 14941 AAGTCAAATGATCCATCAGTCTTCACAAACTTAGGAAGAGCAATAGACGCGAGATTGCAC 14882 Query 76295 ACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTG 76354 ||||| || |||| ||| | ||||| | ||||| ||||||| ||| || ||| Sbjct 14881 ACGGCAACTTCATCGGCAGACGAATATTCAACGATCTCAGTGCATAAATTGGAGCATTTG 14822 Query 76355 ATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCT 76400 || ||||||||||| ||||| || |||||| || |||| |||| Sbjct 14821 ATCGTTCCAAGATTCTGTTGATTACTCTTTGAATTGCATGCATCCT 14776 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 76691 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTA 76750 |||| ||| ||||||| |||||||||||| ||||| || || | | || |||| ||| Sbjct 14331 AACTGCATGATATCAGCATGCCATGGTTCGAGATAGATTGCGAATGCTCCTGGTCTCTTA 14272 Query 76751 TTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATG 76810 || ||||| ||||| | |||| | ||||| || || | |||| | ||| |||| || Sbjct 14271 TTTCCTCCTTGATCCACATATTTCGCAGTATTGTTGAATACTCGAAGCATGGGAACAAGT 14212 Query 76811 CCGTTAGATGTACCATTTGT 76830 || || || |||||||| || Sbjct 14211 CCATTCGAAGTACCATTAGT 14192 >seq11767 Length=21069 Score = 93.3 bits (102), Expect = 6e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 76270 AAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTAT 76329 |||||| || || || ||||| |||||||| || |||| || | ||| | | || Sbjct 20531 AAGAGCGATGGACGCGAGATTGCAAACGGCCACTTCATCAGGGGATGAATACTCCACGAT 20590 Query 76330 CTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTT 76389 ||| || || ||||| ||||||||| ||||| ||||| ||||||||||||||| ||| Sbjct 20591 CTCAGTACACAGATTGGAACACTTGATCGTTCCCAGATTCTGTTGGTTGCTCTTTGCGTT 20650 Query 76390 ACATGAGTCCT 76400 ||| | ||||| Sbjct 20651 ACAGGCGTCCT 20661 >seq5739 Length=20024 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 76692 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTAT 76751 ||||||| ||||||| ||||||||| || ||||| || || | | | || |||||||||| Sbjct 443 ACTCCATGATATCAGCATGCCATGGCTCAAGATAAATAGCGAAAGCTCCGGGTCGTTTAT 502 Query 76752 TACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGC 76811 | || |||||||| | ||| |||| ||||| || | ||| ||| ||| || | | | Sbjct 503 TTCCACCCTGATCAACGTATTTGGCCGTGTTGTTGAACACTTTCAGCATCGGTACGAGTC 562 Query 76812 CGTTAGATGTACCATTTGT 76830 | || || || ||||| || Sbjct 563 CATTCGAGGTTCCATTCGT 581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712811793106560