Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq11608 98.7 2e-15 seq9206 96.9 8e-15 >seq11608 Length=23747 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||||||||| | ||||||||||| | | |||||||||||| || || || || Sbjct 13488 TTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATCTTG 13429 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| |||| | | |||| || ||| || || || || || || ||||| ||| Sbjct 13428 GCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCGGTG 13369 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 || ||||| ||||||| ||||||| Sbjct 13368 AGGGTCTTGACGAAGATCTGCATT 13345 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||||||||| | |||||||| || | | |||||||||||| || || || || Sbjct 14094 TTACCGGCGAAGATCAATCTCTGCTGATCAGGGGGGATTCCTTCCTTGTCCTGGATCTTG 14035 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| |||| | | |||| || ||| || ||||| || || || ||||| ||| Sbjct 14034 GCCTTGACGTTCTCAATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGTG 13975 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 || ||||| ||||||| ||||||| Sbjct 13974 AGGGTCTTGACGAAGATCTGCATT 13951 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||||||||| | ||||||||||| | | |||||||||||| || || || || Sbjct 14397 TTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATCTTG 14338 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| |||| | | |||| || ||| || || || || || || ||||| ||| Sbjct 14337 GCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCGGTG 14278 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 || ||||| ||||||| ||||||| Sbjct 14277 AGGGTCTTGACGAAGATCTGCATT 14254 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||||||||| | |||||||| || | | |||||||||||| || || || || Sbjct 14700 TTACCGGCGAAGATCAATCTCTGCTGATCAGGGGGGATTCCTTCCTTGTCCTGGATCTTG 14641 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| |||| | | |||| || ||| || ||||| || || || ||||| ||| Sbjct 14640 GCCTTGACGTTCTCAATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCGGTG 14581 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 || ||||| ||||||| ||||||| Sbjct 14580 AGGGTCTTGACGAAGATCTGCATT 14557 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||||||||| | ||||||||||| | | |||||||||||| || || || || Sbjct 13791 TTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATCTTG 13732 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| |||| | | |||| || || || || || || || || ||||| ||| Sbjct 13731 GCCTTGACGTTCTCAATGGTGTCGGAGGCTTCGACCTCTAGGGTGATGGTCTTGCCAGTG 13672 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 || ||||| ||||||| ||||||| Sbjct 13671 AGGGTCTTGACGAAGATCTGCATT 13648 >seq9206 Length=19012 Score = 96.9 bits (106), Expect = 8e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||||||||| || ||||||||||| | | |||||| ||||| || || || || Sbjct 11651 TTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTG 11710 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| | || | | |||| || ||| || || || || || || || || ||| Sbjct 11711 GCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGTG 11770 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || ||||||||||||| |||||| Sbjct 11771 AGGGTCTTCACGAAGATCTGCAT 11793 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||||||||| || ||||||||||| | | |||||| ||||| || || || || Sbjct 10335 TTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTG 10394 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| | || | | |||| || ||| || || || || || || || || ||| Sbjct 10395 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGTG 10454 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || ||||||||||||| |||||| Sbjct 10455 AGGGTCTTCACGAAGATCTGCAT 10477 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||||||||| || ||||||||||| | | |||||| ||||| || || || || Sbjct 10638 TTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTG 10697 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| | || | | |||| || ||| || || || || || || || || ||| Sbjct 10698 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGTG 10757 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || ||||||||||||| |||||| Sbjct 10758 AGGGTCTTCACGAAGATCTGCAT 10780 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || ||||||||||| ||||||||||| | | |||||| ||||| || || || || Sbjct 11351 CCAGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 11410 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 ||||| | || | | |||| || ||| || || || || || || || || ||||| Sbjct 11411 TTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGTGAGG 11470 Query 152085 GTCTTCACGAAGACCTGCAT 152104 ||||||||||||| |||||| Sbjct 11471 GTCTTCACGAAGATCTGCAT 11490 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||||||||| || ||||||||||| | | |||||| ||||| || || || || Sbjct 11955 TTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTG 12014 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| | || | | |||| || ||| || || || || || || || || ||| Sbjct 12015 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGTG 12074 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || ||||||||||||| ||||| Sbjct 12075 AGGGTCTTCACGAAGATTTGCAT 12097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153617410959618