Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq9206 114 3e-20 >seq9206 Length=19012 Score = 114 bits (126), Expect = 3e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || ||||| ||||| | | || |||||| || || ||||||||||| |||||| Sbjct 11648 TGCTTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATC 11707 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 || ||||| ||| | ||||| ||||| || || ||||| ||||| ||||| ||||| || Sbjct 11708 TTGGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 11767 Query 283074 GTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| |||||||| Sbjct 11768 GTGAGGGTCTTCACGAAGATCTGCAT 11793 Score = 111 bits (122), Expect = 3e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || ||||| ||||| | | || |||||| || || ||||||||||| |||||| Sbjct 10635 TGCTTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATC 10694 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 || || || ||| | ||||| ||||| || || ||||| ||||| ||||| ||||| || Sbjct 10695 TTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 10754 Query 283074 GTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| |||||||| Sbjct 10755 GTGAGGGTCTTCACGAAGATCTGCAT 10780 Score = 111 bits (122), Expect = 3e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || ||||| ||||| | | || || ||| ||||| ||||||||||| |||||| Sbjct 10938 TGCTTACCGGCGAAGATGAGTCTCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGGATC 10997 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 || || || ||| | ||||| ||||| || || ||||| ||||| ||||| ||||| || Sbjct 10998 TTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 11057 Query 283074 GTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| |||||||| Sbjct 11058 GTGAGGGTCTTCACGAAGATCTGCAT 11083 Score = 111 bits (122), Expect = 3e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || ||||| ||||| | | || || ||| ||||| ||||||||||| |||||| Sbjct 12255 TGCTTACCGGCGAAGATGAGTCTCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGGATC 12314 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 || || || ||| | ||||| ||||| || || ||||| ||||| ||||| ||||| || Sbjct 12315 TTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 12374 Query 283074 GTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| |||||||| Sbjct 12375 GTGAGGGTCTTCACGAAGATCTGCAT 12400 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||| ||||| | | || |||||| || || ||||||||||| |||||||| Sbjct 10335 TTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTG 10394 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || ||| | ||||| ||||| || || ||||| ||||| ||||| ||||| || || Sbjct 10395 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGTG 10454 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| |||||||| Sbjct 10455 AGGGTCTTCACGAAGATCTGCAT 10477 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||| ||||| | | || |||||| || || ||||||||||| |||||||| Sbjct 11955 TTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTG 12014 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || ||| | ||||| ||||| || || ||||| ||||| ||||| ||||| || || Sbjct 12015 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGTG 12074 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| || ||||| Sbjct 12075 AGGGTCTTCACGAAGATTTGCAT 12097 Score = 100 bits (110), Expect = 6e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 || || ||||||||||| |||||||| || || ||| | ||||| ||||| || || ||| Sbjct 11381 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCG 11440 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 11441 ACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 11490 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 || || ||||||||||| |||||||| || || ||| | ||||| ||||| || || ||| Sbjct 12698 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCG 12757 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| ||||| || || | || || ||||| || ||||| Sbjct 12758 ACCTCGAGGGTGATGGTCTTTCCGGTGAGCGTTTTGACGAAAATTTGCAT 12807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046554686701732