Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq11608 102 6e-17 seq9206 98.7 7e-16 >seq11608 Length=23747 Score = 102 bits (112), Expect = 6e-17 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| ||||| ||||| |||||||| | |||||| || | || | |||||||| ||| Sbjct 13800 TCCAATTGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCC 13741 Query 44246 GTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 ||||| ||| | |||| | |||||||||| || ||| ||||| | || || || Sbjct 13740 TGGATCTTGGCCTTGAC-GTTCTCAATGGTGTCGGAGGCTTCGACCTCTAGGGTGATGGT 13682 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || ||||||||||| |||||||| ||||| Sbjct 13681 CTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 13649 Score = 102 bits (112), Expect = 6e-17 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| ||||| ||||| |||||||| | ||||||||| | || | |||||||| ||| Sbjct 14103 TCCAATTGCTTACCGGCGAAGATCAATCTCTGCTGATCAGGGGGGATTCCTTCCTTGTCC 14044 Query 44246 GTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 ||||| ||| | |||| | |||||||||| || || ||||| | || || || Sbjct 14043 TGGATCTTGGCCTTGAC-GTTCTCAATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGT 13985 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || ||||||||||| |||||||| ||||| Sbjct 13984 CTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 13952 Score = 100 bits (110), Expect = 2e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 ||||| ||||| |||||||| | ||||||||| | || | |||||||| ||| ||| Sbjct 14703 TGCTTACCGGCGAAGATCAATCTCTGCTGATCAGGGGGGATTCCTTCCTTGTCCTGGATC 14644 Query 44252 TTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCC 44310 || ||| | |||| | |||||||||| || || ||||| | || || ||||| || Sbjct 14643 TTGGCCTTGAC-GTTCTCAATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCC 14585 Query 44311 CGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||| |||||||| ||||| Sbjct 14584 GGTGAGGGTCTTGACGAAGATCTGCAT 14558 Score = 98.7 bits (108), Expect = 7e-16 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| ||||| ||||| |||||||| | |||||| || | || | |||||||| ||| Sbjct 13497 TCCAATTGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCC 13438 Query 44246 GTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 ||||| ||| | |||| | |||||||||| || || ||||| | || || || Sbjct 13437 TGGATCTTGGCCTTGAC-GTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGT 13379 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || ||||||||||| |||||||| ||||| Sbjct 13378 CTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 13346 Score = 98.7 bits (108), Expect = 7e-16 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| ||||| ||||| |||||||| | |||||| || | || | |||||||| ||| Sbjct 14406 TCCAATTGCTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCC 14347 Query 44246 GTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 ||||| ||| | |||| | |||||||||| || || ||||| | || || || Sbjct 14346 TGGATCTTGGCCTTGAC-GTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGT 14288 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || ||||||||||| |||||||| ||||| Sbjct 14287 CTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 14255 Score = 96.9 bits (106), Expect = 2e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||| |||||||| | |||||| || | || | |||||||| ||| ||||| | Sbjct 13144 CCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATCTTGGCC 13085 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || | || | |||||||||| || || ||||| | || || ||||| || |||||| Sbjct 13084 TTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTACCGGTGAGG 13025 Query 44318 GTCTTCACGAAGATTTGCATG 44338 ||||| ||||||||||||||| Sbjct 13024 GTCTTGACGAAGATTTGCATG 13004 >seq9206 Length=19012 Score = 98.7 bits (108), Expect = 7e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 ||||| ||||| ||||| | | ||||||||| | || | || ||||| ||| ||| Sbjct 10938 TGCTTACCGGCGAAGATGAGTCTCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGGATC 10997 Query 44252 TTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCC 44311 || ||| | || | |||||||||| || || ||||| | || || |||||||| Sbjct 10998 TTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 11057 Query 44312 GTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||||||||||||||| |||||| Sbjct 11058 GTGAGGGTCTTCACGAAGATCTGCATG 11084 Score = 98.7 bits (108), Expect = 7e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 ||||| ||||| ||||| | | ||||||||| | || | || ||||| ||| ||| Sbjct 12255 TGCTTACCGGCGAAGATGAGTCTCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGGATC 12314 Query 44252 TTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCC 44311 || ||| | || | |||||||||| || || ||||| | || || |||||||| Sbjct 12315 TTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 12374 Query 44312 GTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||||||||||||||| |||||| Sbjct 12375 GTGAGGGTCTTCACGAAGATCTGCATG 12401 Score = 95.1 bits (104), Expect = 9e-15 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 ||||| ||||| ||||| | | |||||| || | || | || ||||| ||| ||| Sbjct 10635 TGCTTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATC 10694 Query 44252 TTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCC 44311 || ||| | || | |||||||||| || || ||||| | || || |||||||| Sbjct 10695 TTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCA 10754 Query 44312 GTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||||||||||||||| |||||| Sbjct 10755 GTGAGGGTCTTCACGAAGATCTGCATG 10781 Score = 93.3 bits (102), Expect = 3e-14 Identities = 111/148 (75%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 ||||| ||||| ||||| | | |||||| || | || | || ||||| ||| ||| Sbjct 11648 TGCTTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATC 11707 Query 44252 TTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCC 44310 || |||| | ||| | |||||||||| || || ||||| | || || |||||||| Sbjct 11708 TTG-GCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCC 11766 Query 44311 CGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||||||||||||||| |||||| Sbjct 11767 AGTGAGGGTCTTCACGAAGATCTGCATG 11794 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 44195 TTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTC 44254 || ||||| ||||| | | |||||| || | || | || ||||| ||| ||||| Sbjct 11955 TTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTG 12014 Query 44255 TGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTG 44314 ||| | || | |||||||||| || || ||||| | || || |||||||| ||| Sbjct 12015 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGTG 12074 Query 44315 AGGGTCTTCACGAAGATTTGCATG 44338 |||||||||||||||||||||||| Sbjct 12075 AGGGTCTTCACGAAGATTTGCATG 12098 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 44195 TTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTC 44254 || ||||| ||||| | | |||||| || | || | || ||||| ||| ||||| Sbjct 10335 TTACCGGCGAAGATGAGTCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTG 10394 Query 44255 TGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTG 44314 ||| | || | |||||||||| || || ||||| | || || |||||||| ||| Sbjct 10395 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGTG 10454 Query 44315 AGGGTCTTCACGAAGATTTGCATG 44338 ||||||||||||||||| |||||| Sbjct 10455 AGGGTCTTCACGAAGATCTGCATG 10478 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || || ||||| | | |||||| || | ||| | || ||||| ||| ||||| | Sbjct 11351 CCAGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 11410 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || | || | |||||||||| || || ||||| | || || |||||||| |||||| Sbjct 11411 TTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCAGTGAGG 11470 Query 44318 GTCTTCACGAAGATTTGCATG 44338 |||||||||||||| |||||| Sbjct 11471 GTCTTCACGAAGATCTGCATG 11491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359930038384686