Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq9206 149 2e-30 seq11608 132 1e-25 >seq9206 Length=19012 Score = 149 bits (164), Expect = 2e-30 Identities = 115/137 (84%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| ||||| ||||| || |||||||||||||| || ||| ||| Sbjct 12804 CAAATTTTCGTCAAAACGCTCACCGGAAAGACCATCACCCTCGAGGTCGAGGCCTCCGAC 12745 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || ||||||||||| |||||||| Sbjct 12744 ACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAG 12685 Query 178044 CGACTTATCTTCGCCGG 178060 ||||||||||||| || Sbjct 12684 AGACTTATCTTCGCTGG 12668 Score = 141 bits (156), Expect = 2e-28 Identities = 117/143 (82%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| ||||| || |||||||||||||| || ||| ||| Sbjct 11790 CAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAGGCCTCCGAC 11731 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||||||| ||||| |||||||| || |||||||| || |||||||| Sbjct 11730 ACCATCGAAAACGTCAAAGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAGCAG 11671 Query 178044 CGACTTATCTTCGCCGGAAAACA 178066 |||| ||||||||||| || || Sbjct 11670 AGACTCATCTTCGCCGGTAAGCA 11648 Score = 140 bits (154), Expect = 8e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| ||||| || |||||||||||||| || ||| ||| Sbjct 11487 CAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAGGCCTCCGAC 11428 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || ||||||||||| |||||||| Sbjct 11427 ACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAG 11368 Query 178044 CGACTTATCTTCGCCGG 178060 ||||||||||||| || Sbjct 11367 AGACTTATCTTCGCTGG 11351 Score = 140 bits (154), Expect = 8e-28 Identities = 115/140 (82%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || ||||| ||||| || |||||||||||||| || ||| ||| Sbjct 12094 CAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAGGCCTCCGAC 12035 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || |||||||| || |||||||| Sbjct 12034 ACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAGCAG 11975 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||| ||||||||||| || Sbjct 11974 AGACTCATCTTCGCCGGTAA 11955 Score = 136 bits (150), Expect = 1e-26 Identities = 114/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| ||||| || |||||||||||||| || ||| ||| Sbjct 10474 CAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAGGCCTCCGAC 10415 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || |||||||| || |||||||| Sbjct 10414 ACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAGCAG 10355 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||| ||||||||||| || Sbjct 10354 AGACTCATCTTCGCCGGTAA 10335 Score = 136 bits (150), Expect = 1e-26 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| ||||| || |||||||||||||| || ||| ||| Sbjct 10777 CAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAGGCCTCCGAC 10718 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || |||||||| || |||||||| Sbjct 10717 ACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAGCAG 10658 Query 178044 CGACTTATCTTCGCCGGAAAACA 178066 |||| ||||||||||| || || Sbjct 10657 AGACTCATCTTCGCCGGTAAGCA 10635 Score = 127 bits (140), Expect = 5e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| ||||| || |||||||||||||| || ||| ||| Sbjct 11080 CAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAGGCCTCCGAC 11021 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || ||||| || || || ||||| Sbjct 11020 ACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAGCAG 10961 Query 178044 CGACTTATCTTCGCCGGAAAACA 178066 |||| ||||||||||| || || Sbjct 10960 AGACTCATCTTCGCCGGTAAGCA 10938 Score = 127 bits (140), Expect = 5e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| ||||| || |||||||||||||| || ||| ||| Sbjct 12397 CAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAGGCCTCCGAC 12338 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || ||||| || || || ||||| Sbjct 12337 ACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAGCAG 12278 Query 178044 CGACTTATCTTCGCCGGAAAACA 178066 |||| ||||||||||| || || Sbjct 12277 AGACTCATCTTCGCCGGTAAGCA 12255 >seq11608 Length=23747 Score = 132 bits (146), Expect = 1e-25 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||||||||| || ||| ||| Sbjct 13349 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGGCCTCCGAC 13408 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| |||||||| ||||||||||| || |||||||| Sbjct 13409 ACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCTGACCAGCAG 13468 Query 178044 CGACTTATCTTCGCCGGAAAACA 178066 || | ||||||||||| || || Sbjct 13469 AGATTGATCTTCGCCGGTAAGCA 13491 Score = 132 bits (146), Expect = 1e-25 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||||||||| || ||| ||| Sbjct 14258 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGGCCTCCGAC 14317 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| |||||||| ||||||||||| || |||||||| Sbjct 14318 ACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCTGACCAGCAG 14377 Query 178044 CGACTTATCTTCGCCGGAAAACA 178066 || | ||||||||||| || || Sbjct 14378 AGATTGATCTTCGCCGGTAAGCA 14400 Score = 131 bits (144), Expect = 4e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || |||||||||||||| || ||| ||| Sbjct 13008 CAAATCTTCGTCAAGACCCTCACCGGTAAGACCATCACCCTCGAGGTCGAGGCCTCCGAC 13067 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| ||||||||||| || |||||||| Sbjct 13068 ACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCTGACCAGCAG 13127 Query 178044 CGACTTATCTTCGCCGG 178060 || | ||||||||||| Sbjct 13128 AGATTGATCTTCGCCGG 13144 Score = 127 bits (140), Expect = 5e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| ||||| ||| ||| ||| Sbjct 13652 CAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTAGAGGTCGAAGCCTCCGAC 13711 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| |||||||| ||||||||||| || |||||||| Sbjct 13712 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCTGACCAGCAG 13771 Query 178044 CGACTTATCTTCGCCGGAAAACA 178066 || | ||||||||||| || || Sbjct 13772 AGATTGATCTTCGCCGGTAAGCA 13794 Score = 118 bits (130), Expect = 3e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| ||||| || ||| ||| Sbjct 13955 CAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGGCCTCCGAC 14014 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| |||||||| ||||||||||| || || ||||| Sbjct 14015 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCTGATCAGCAG 14074 Query 178044 CGACTTATCTTCGCCGGAAAACA 178066 || | ||||||||||| || || Sbjct 14075 AGATTGATCTTCGCCGGTAAGCA 14097 Score = 118 bits (130), Expect = 3e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| ||||| || ||| ||| Sbjct 14561 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGGCCTCCGAC 14620 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| |||||||| ||||||||||| || || ||||| Sbjct 14621 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCTGATCAGCAG 14680 Query 178044 CGACTTATCTTCGCCGGAAAACA 178066 || | ||||||||||| || || Sbjct 14681 AGATTGATCTTCGCCGGTAAGCA 14703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203519013035052