Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq30 167 2e-36 >seq30 Length=447140 Score = 167 bits (184), Expect = 2e-36 Identities = 478/726 (66%), Gaps = 8/726 (1%) Strand=Plus/Plus Query 15913 TTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTC 15972 ||| || ||| | || | | |||||||||| |||||||| || | || || |||||||| Sbjct 100450 TTGATATTCAGTTACTCTTCTTTCGAAGAAATTAGTTTTCCCTTGCAAGGAGATATTTTC 100509 Query 15973 CATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTAC--CCCAGTTCCGTAACT 16030 |||||| ||||| ||||| ||| || | || | ||| || || || | | | Sbjct 100510 CATAAACTCAAAAGGATTTTTAGTGTTGTATTTTTTGG-GTAGTTCCAAGGTCA-TGAGT 100567 Query 16031 AATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGT 16090 | ||| || || |||| || |||||| |||| | |||| ||| ||||| | ||| Sbjct 100568 AGATGATCGGCAACGTATTCGATGTATTGAGACATAAGGTCGTGATTCATTCCGAGAAGA 100627 Query 16091 CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATA 16150 || |||| | || ||||||| | ||| || |||| ||||| ||| || Sbjct 100628 GAGCATGGTAGAGACTCCGTCAAAAATTCCTTTTCGATTTCAACGGCTTCGCCAATAATT 100687 Query 16151 TCGGTGGCTCGTGTTTC-AGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAA 16209 | ||| || || || ||| | | | ||| | | |||| ||||| || || Sbjct 100688 T-GGTATATCTTGGCGGGAGTTGGTTTGTCATCTAGAAGGCGATACATGAGACAGGCAAA 100746 Query 16210 GTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCAT 16269 || | ||| || ||||||||||| || | || ||||| | ||| || | | Sbjct 100747 ATCACGATGGAGGCCTTCGTCTCTTGAAATCAACTCATTGGATTGACATAAACCATGTAA 100806 Query 16270 TTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTC 16329 ||| ||| |||| | |||||| || | ||||||||| || |||||||| || ||||| Sbjct 100807 TTTGCCTTTGCTCTTCATCCAGAAGATAGAAGCAAATGATCCGGAAAAGAAAATCCCCTC 100866 Query 16330 AACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTT 16389 || | ||||||||| || |||| ||| || | | |||||| || | | ||||||||| Sbjct 100867 TACGGCTGCAAAAGCAATGCATCGCTCCCCGAAAGGAGCATCCTTGTCATTAATCCATTT 100926 Query 16390 CTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTT-TCTATGGCCTTAAACAATT 16448 | |||| || || |||| || |||| || | ||| || | || |||||||| | Sbjct 100927 CAAAGCCCAGTCAGCCTTTTTCTTGATAC-ATGGGTAGTTCTCCAAAGCATTAAACAACT 100985 Query 16449 TCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGT 16508 | || ||||||| ||| | || || | |||||||| ||||| || || | Sbjct 100986 TATCCTTTTCCTTTGCATCAGTAATGTAAGCCTCAATCAGCTTCGAATACATCTCAGAAT 101045 Query 16509 GTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTT 16568 | ||||| || || || || || | || || | ||||||| | |||| |||| Sbjct 101046 GGATGTTTTCAATAAAGATTTGGAACCGGTAAAAATAGAGAGCCTCGGGCATTTTAACTT 101105 Query 16569 CCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACG 16628 | | || ||||| || || | || || || || || |||||||||||| | Sbjct 101106 CATCCATGAAGCGTTCTAGCAAATTGGCGTTGACTATGCCATCTGATGCAGCAAAAAAAG 101165 Query 16629 CCAATA 16634 |||||| Sbjct 101166 CCAATA 101171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511411389047720