Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq41 123 2e-23 >seq41 Length=345181 Score = 123 bits (136), Expect = 2e-23 Identities = 446/691 (65%), Gaps = 5/691 (1%) Strand=Plus/Minus Query 101533 TTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAATGTC 101592 |||||||||||||| |||||| ||| || || | ||| ||||| | | |||| Sbjct 114334 TTAAACAGCCATATCCATTTTGATTCCTGGATGACATTGATAATTTTCGAGAACTATGTT 114275 Query 101593 ATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGG 101652 || |||| || ||||| ||| | | || | |||| | | ||||| || || Sbjct 114274 GTCACACGTAAAATCGTCAATACATTTGATGTCTCCAACAAACTTGACGGTTGGGAATGG 114215 Query 101653 TCTAGGAGTTCGCGTCAACT-GCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAG 101711 || ||| ||||| | | |||| | ||||| | ||||| | |||||||||| Sbjct 114214 GAATGGCTTTCT-GTCAAGTTGTTTTTTCAATGCATCTACGTGATTTGTGTAGATGTGAG 114156 Query 101712 CATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGC 101771 ||| | || | ||| ||| ||||| | | | || | || |||||| Sbjct 114155 CATTGCAAATGTTGTGGCAAAAATCTCCCGTCTTCAAGCCGCACACTTTGGCGATCATGT 114096 Query 101772 AAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATC 101831 |||| || | ||| ||||||||| || || || |||| || |||||| | | Sbjct 114095 GGGTTAGGAGTGCATAAGAAGCAATGTTGAAAGGAACCCCTAGACCTATATCACCACTAC 114036 Query 101832 TTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATGAC 101891 |||| || || ||| | || ||||| | |||| ||| || | |||| Sbjct 114035 GTTGAGTCAAATGGCAGTTTAACTCCCCATCCAAAACATCGAATACCACAAAGGCGTGAC 113976 Query 101892 AAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTC 101951 | || || | |||||||| ||||| | | ||||||| || | | | || || | Sbjct 113975 ACGGTGGAAGGGCCATTTTATCGATGTCAGCAGCATTCCATGCGGAGAGGACAATTCTGC 113916 Query 101952 TATCTGTAGGGTTTGTTTTT-ATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCT 102010 | ||| ||| | ||||| || |||||| | ||| ||| |||||||| || | Sbjct 113915 GGT-TGTTGGGATCATTTTTGATTTGATCAATAACTTGTGCTAACTGGTCAACACCCTGC 113857 Query 102011 CCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCA 102070 || | || || | |||| ||| | ||||| ||||| | ||| ||||| || Sbjct 113856 CCAGTGTAGTCAGTTTTGCAATCTTTGTATACAGCTCCAAAATGGCGCCATTGAAAGCCG 113797 Query 102071 TACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGAT 102130 || ||||| ||||| |||||||| || || || || || || ||||| || || | | Sbjct 113796 TATACAGGCCCAAGGTCTCCTTCTTCCCTTTCCGTGAATCCTAGATTATCCAAGAACGCT 113737 Query 102131 CTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTA 102190 ||||| ||||| ||||||||||| | || ||| ||||||| | | ||| || || Sbjct 113736 CTAGAACCATTTGCATCCCAAATTTTGACCCCATTAGCTGATAACACCTTGGAATCGGTG 113677 Query 102191 GATCCTCTGATAAACCACAACAGTT-CTTCA 102220 ||| |||||||||||||| || ||||| Sbjct 113676 TTTCCGGAGATAAACCACAACAATTCCTTCA 113646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361249126305221