Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq32 91.5 1e-13 seq6 91.5 1e-13 >seq32 Length=411647 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || || |||| || ||||| || ||||| ||||| ||| ||| | | Sbjct 325833 AATGCAGATTTTTGTCAAGACTTTGACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTC 325892 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | | | ||| || || || || ||||| | ||| |||||| Sbjct 325893 TGACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCA 325952 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||||| | |||||||| || |||||| |||||||| | ||| | |||| ||||| Sbjct 325953 ACAAAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCTTATCCGACTACAA 326012 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || |||||||| |||||| |||| | || | ||||||| Sbjct 326013 CATCCAAAAAGAATCTACCCTTCACTTGGTTCTTAGACTTAGAGGAGG 326060 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || ||||| | ||| |||||||||| | ||||||||||| || || ||| ||||| Sbjct 326155 GACAAGGAAGGAATTCCCCCAGATCAACAACGTCTTATCTTTGCCGGAAAGCAATTGGAA 326214 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| ||| || |||| ||||| || || || |||||||| |||||| |||| || Sbjct 326215 GATGGGCGTACTTTGTCCGACTACAACATCCAAAAAGAATCTACCCTTCACTTGGTTTTG 326274 Query 29175 CGATTACGAGGAGG 29188 || | || ||||| Sbjct 326275 AGACTTCGTGGAGG 326288 >seq6 Length=947499 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | |||||| | || || ||||| |||||| || || | | Sbjct 443095 AATGCAAATTTTCGTTAAAACACTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATC 443036 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| |||||| || || ||||| | || ||| || Sbjct 443035 CGACACCATCGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCA 442976 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||||||||||||||||| || || ||| | |||||| | || | |||| ||||| Sbjct 442975 ACAAAGACTTATCTTTGCTGGAAAGCAATTAGAAGATGGCCGTACCCTCTCCGACTACAA 442916 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| ||||| ||||| ||||| ||| |||| | || | ||||||| Sbjct 442915 TATCCAGAAAGAATCAACTCTCCACTTGGTTCTTAGACTCAGAGGAGG 442868 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || ||| |||||||||||||||||||| || || ||| | ||| Sbjct 442317 GACAAAGAAGGAATCCCTCCAGACCAACAAAGACTTATCTTTGCCGGAAAGCAATTAGAA 442258 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | |||| | || ||||| || || ||||| || |||||||| |||| || Sbjct 442257 GATGGGAGAACTTTAAGTGACTACAACATCCAAAAGGAGTCAACTCTTCATTTGGTCTTG 442198 Query 29175 CGATTACGAGGAGG 29188 |||| || ||||| Sbjct 442197 AGATTGCGTGGAGG 442184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428333541217505