Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq32 105 5e-18 seq6 96.9 3e-15 >seq32 Length=411647 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || || |||| || ||||| || ||||| ||||| ||| ||| | | Sbjct 325833 AATGCAGATTTTTGTCAAGACTTTGACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTC 325892 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | ||||| || || || || ||||| | ||| |||||| Sbjct 325893 TGACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCA 325952 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||||| | |||||||| || ||||||||||||||| | ||| | |||| ||||| Sbjct 325953 ACAAAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCTTATCCGACTACAA 326012 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||| |||||||| |||||| |||| | || | ||||||| Sbjct 326013 CATCCAAAAAGAATCTACCCTTCACTTGGTTCTTAGACTTAGAGGAGG 326060 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || ||||| | ||| |||||||||| | ||||||||||| || || ||||||||| Sbjct 326155 GACAAGGAAGGAATTCCCCCAGATCAACAACGTCTTATCTTTGCCGGAAAGCAATTGGAA 326214 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| ||| || |||| ||||| || ||||| |||||||| |||||| |||| || Sbjct 326215 GATGGGCGTACTTTGTCCGACTACAACATCCAAAAAGAATCTACCCTTCACTTGGTTTTG 326274 Query 25248 CGATTACGAGGAGG 25261 || | || ||||| Sbjct 326275 AGACTTCGTGGAGG 326288 >seq6 Length=947499 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | |||||| | || || ||||| |||||| || || | | Sbjct 443095 AATGCAAATTTTCGTTAAAACACTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATC 443036 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || ||||| |||||| || || ||||| | || ||| || Sbjct 443035 CGACACCATCGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCA 442976 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||||||||||||||| || || ||||| |||||| | || | |||| ||||| Sbjct 442975 ACAAAGACTTATCTTTGCTGGAAAGCAATTAGAAGATGGCCGTACCCTCTCCGACTACAA 442916 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| || || ||||| ||||| ||| |||| | || | ||||||| Sbjct 442915 TATCCAGAAAGAATCAACTCTCCACTTGGTTCTTAGACTCAGAGGAGG 442868 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | || ||| |||||||||||||||||||| || || ||||| ||| Sbjct 442317 GACAAAGAAGGAATCCCTCCAGACCAACAAAGACTTATCTTTGCCGGAAAGCAATTAGAA 442258 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | |||| | || ||||| || |||||||| || |||||||| |||| || Sbjct 442257 GATGGGAGAACTTTAAGTGACTACAACATCCAAAAGGAGTCAACTCTTCATTTGGTCTTG 442198 Query 25248 CGATTACGAGGAGG 25261 |||| || ||||| Sbjct 442197 AGATTGCGTGGAGG 442184 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| |||| || ||||| || |||||||| ||| ||| ||| | | Sbjct 442867 AATGCAAATCTTCGTCAAGACTTTGACCGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 442808 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | |||| || || || || ||||| | || ||| || Sbjct 442807 CGACACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACCA 442748 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||||||||||||||| || || |||||||| ||| | |||| | || ||||| Sbjct 442747 ACAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACAA 442688 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||| || || ||||| |||| | || | ||||||| Sbjct 442687 CATCCAAAAGGAGTCAACCCTTCATTTGGTCCTCAGACTCAGAGGAGG 442640 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| |||| || | || || |||||||| ||| ||| ||| | | Sbjct 442639 AATGCAAATCTTCGTCAAGACCCTTACTGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 442580 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | |||| || || || || ||||| | || ||| || Sbjct 442579 CGACACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACCA 442520 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||||||||||||||| || || |||||||| ||| | |||| | || ||||| Sbjct 442519 ACAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACAA 442460 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||| || || ||||| |||| | || | ||||||| Sbjct 442459 CATCCAAAAGGAGTCAACCCTTCATTTGGTCCTCAGACTCAGAGGAGG 442412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410794441897994