Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq41 123 2e-23 >seq41 Length=345181 Score = 123 bits (136), Expect = 2e-23 Identities = 452/697 (65%), Gaps = 12/697 (2%) Strand=Plus/Minus Query 96898 TAAACAGCCATGGGCATTTTTATGCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTCA 96957 ||||||||||| |||||| || | || | | | ||| ||||| |||| |||| Sbjct 114333 TAAACAGCCATATCCATTTTGATTCCTGGATGACATTGATAATTTTCGAGAACTATGTTG 114274 Query 96958 TTTGCTTTAAAATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTGTTGGGAAAGGC 97017 | ||||||| |||||| || || | || ||||||| | |||||||| || Sbjct 114273 TCACACGTAAAATCGTCAATACATTTGATGTCTCCAACAAACTTGACGGTTGGGAATGGG 114214 Query 97018 CTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCA 97077 || ||| ||| || | | | | ||||| | |||||| || ||||||||| Sbjct 114213 AATGGCTTTCTGTCAAGTTGTTTTTTCAATGCATCTACGTGATTTGTGTAGATGTGAGCA 114154 Query 97078 TCTCCTAAAGT-GTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACA 97136 | | | || || ||| ||| ||||| | || | || | ||||||||| Sbjct 114153 T-TGCAAATGTTGTGGCAAAAATCTCCCGTCTTCAAGCCGCACACTTTGGCGATCATGTG 114095 Query 97137 AGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCT 97196 |||| || | ||| ||||||||| ||||| |||||||| || |||||| | | Sbjct 114094 GGTTAGGAGTGCATAAGAAGCAATGTTGAAAGGAACCCCTAGACCTATATCACCACTACG 114035 Query 97197 TTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATA-CATGAC 97255 |||| || || ||| | || ||||| | |||| || | | ||| | |||| Sbjct 114034 TTGAGTCAAATGGCAGTTTAACTCCCCATCCAAAACATCGAA-TACCACAAAGGCGTGAC 113976 Query 97256 AGGGGGGCAACGCCATTTTTGGAAC-ATCTAAGA--CATTCCAAGCACACATCAACATTC 97312 | || || | |||||||| | | || | || ||||||| || | | | |||| Sbjct 113975 ACGGTGGAAGGGCCATTTT---ATCGATGTCAGCAGCATTCCATGCGGAGAGGACAATTC 113919 Query 97313 TTCTATCGGTTGGGTTTGTGTGT-ATGGTATTAATTATCTGCTTTAATTGATCAACGCCT 97371 | | | | ||||| | | | | || || ||| | || ||| || ||||| || Sbjct 113918 TGCGGTTG-TTGGGATCATTTTTGATTTGATCAATAACTTGTGCTAACTGGTCAACACCC 113860 Query 97372 TCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAAT 97431 | ||| || | || | ||| ||| | ||||||||||| | |||||| || Sbjct 113859 TGCCCAGTGTAGTCAGTTTTGCAATCTTTGTATACAGCTCCAAAATGGCGCCATTGAAAG 113800 Query 97432 CCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAG 97491 || || ||||| ||||||||||||||||| || || ||| || || ||||| || | Sbjct 113799 CCGTATACAGGCCCAAGGTCTCCTTCTTCCCTTTCCGTGAATCCTAGATTATCCAAGAAC 113740 Query 97492 GACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCA 97551 | ||||| ||||||||||||||||| | || ||| |||| | | | ||| || Sbjct 113739 GCTCTAGAACCATTTGCATCCCAAATTTTGACCCCATTAGCTGATAACACCTTGGAATCG 113680 Query 97552 GTAGATCCTCTGATAAACCACAACAATTCTTCCACAA 97588 || ||| |||||||||||||||||| | || || Sbjct 113679 GTGTTTCCGGAGATAAACCACAACAATTCCTTCATAA 113643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346782009351470